Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1BO60663 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC14.92□□□□□ -0.02
LMX1BO60663 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
LMX1BO60663 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
LMX1BO60663 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
LMX1BO60663 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
LMX1BO60663 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
LMX1BO60663 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LMX1BO60663 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
LMX1BO60663 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC14.92□□□□□ -0.02
LMX1BO60663 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.91□□□□□ -0.02
LMX1BO60663 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.91□□□□□ -0.02
LMX1BO60663 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
LMX1BO60663 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 TP73-AS1-210ENST00000637775 1455 ntBASIC14.91□□□□□ -0.02
LMX1BO60663 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
LMX1BO60663 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC14.91□□□□□ -0.02
LMX1BO60663 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC14.91□□□□□ -0.02
LMX1BO60663 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC14.91□□□□□ -0.02
LMX1BO60663 AC009533.2-201ENST00000543664 586 ntBASIC14.91□□□□□ -0.02
LMX1BO60663 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
LMX1BO60663 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
LMX1BO60663 AC011467.2-201ENST00000598425 242 ntBASIC14.91□□□□□ -0.02
LMX1BO60663 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 AL049840.3-201ENST00000602669 611 ntBASIC14.91□□□□□ -0.02
LMX1BO60663 MIR7706-201ENST00000613747 67 ntBASIC14.91□□□□□ -0.02
LMX1BO60663 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 AD001527.2-201ENST00000622994 785 ntBASIC14.91□□□□□ -0.02
LMX1BO60663 AC073592.5-201ENST00000624854 528 ntBASIC14.91□□□□□ -0.02
LMX1BO60663 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
LMX1BO60663 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
LMX1BO60663 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.91□□□□□ -0.02
LMX1BO60663 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1BO60663 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC14.91□□□□□ -0.02
LMX1BO60663 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC14.91□□□□□ -0.02
LMX1BO60663 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
LMX1BO60663 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC14.91□□□□□ -0.02
LMX1BO60663 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
LMX1BO60663 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.91□□□□□ -0.02
LMX1BO60663 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.9□□□□□ -0.02
LMX1BO60663 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC14.9□□□□□ -0.02
LMX1BO60663 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC14.9□□□□□ -0.02
LMX1BO60663 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
LMX1BO60663 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
LMX1BO60663 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
LMX1BO60663 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
LMX1BO60663 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
LMX1BO60663 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC14.9□□□□□ -0.02
LMX1BO60663 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
LMX1BO60663 FGFR3P6-201ENST00000457012 610 ntBASIC14.9□□□□□ -0.02
LMX1BO60663 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
LMX1BO60663 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC14.9□□□□□ -0.02
LMX1BO60663 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.9□□□□□ -0.02
LMX1BO60663 AC116407.3-201ENST00000623905 1129 ntBASIC14.9□□□□□ -0.02
LMX1BO60663 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
LMX1BO60663 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
LMX1BO60663 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
LMX1BO60663 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC14.9□□□□□ -0.02
LMX1BO60663 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.9□□□□□ -0.02
LMX1BO60663 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
LMX1BO60663 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LMX1BO60663 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1BO60663 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms