Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ISCU-203ENST00000431221 799 ntTSL 2 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 AP000550.4-202ENST00000639755 178 ntBASIC14.85□□□□□ -0.03
NKX3-1Q99801 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
NKX3-1Q99801 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
NKX3-1Q99801 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 TSPY26P-202ENST00000565928 3884 ntBASIC14.84□□□□□ -0.03
NKX3-1Q99801 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 AC026691.1-201ENST00000602502 2017 ntBASIC14.84□□□□□ -0.03
NKX3-1Q99801 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 RN7SL606P-201ENST00000472779 293 ntBASIC14.84□□□□□ -0.03
NKX3-1Q99801 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
NKX3-1Q99801 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
NKX3-1Q99801 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
NKX3-1Q99801 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.83□□□□□ -0.03
NKX3-1Q99801 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
NKX3-1Q99801 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
NKX3-1Q99801 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
NKX3-1Q99801 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC14.83□□□□□ -0.03
NKX3-1Q99801 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC14.83□□□□□ -0.03
NKX3-1Q99801 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.03
NKX3-1Q99801 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC14.83□□□□□ -0.03
NKX3-1Q99801 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.83□□□□□ -0.03
NKX3-1Q99801 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 FRMD8P1-201ENST00000440433 1524 ntBASIC14.83□□□□□ -0.04
NKX3-1Q99801 FUT8-AS1-201ENST00000621019 1521 ntBASIC14.83□□□□□ -0.04
NKX3-1Q99801 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 BAALC-202ENST00000306391 243 ntTSL 5 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 BAALC-204ENST00000330955 222 ntTSL 5 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 MYCLP1-201ENST00000372451 1075 ntBASIC14.83□□□□□ -0.04
NKX3-1Q99801 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms