Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 PENK-208ENST00000523051 772 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 LITAF-211ENST00000572255 516 ntTSL 4 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 AC116407.3-201ENST00000623905 1129 ntBASIC13.11□□□□□ -0.31
CCDC140Q96MF4 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC13.11□□□□□ -0.31
CCDC140Q96MF4 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 AC092171.3-201ENST00000610122 2651 ntBASIC13.1□□□□□ -0.31
CCDC140Q96MF4 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 AC093909.1-201ENST00000504731 1122 ntBASIC13.1□□□□□ -0.31
CCDC140Q96MF4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 AL589935.2-201ENST00000616471 1231 ntBASIC13.1□□□□□ -0.31
CCDC140Q96MF4 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC13.1□□□□□ -0.31
CCDC140Q96MF4 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 HLA-A-202ENST00000376806 1854 ntBASIC13.09□□□□□ -0.31
CCDC140Q96MF4 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 MRPL20P1-201ENST00000400819 433 ntBASIC13.09□□□□□ -0.31
CCDC140Q96MF4 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 AMT-206ENST00000458307 1860 ntTSL 2 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 AC108751.1-201ENST00000490852 363 ntBASIC13.09□□□□□ -0.31
CCDC140Q96MF4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC13.09□□□□□ -0.31
CCDC140Q96MF4 PC-204ENST00000524491 1714 ntTSL 2 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms