Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 ANKRD20A18P-201ENST00000359341 492 ntBASIC15.22■□□□□ 0.03
CCDC58Q4VC31 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 AC103564.2-201ENST00000432853 1299 ntBASIC15.22■□□□□ 0.03
CCDC58Q4VC31 TSPY15P-201ENST00000457163 923 ntBASIC15.22■□□□□ 0.03
CCDC58Q4VC31 AC122714.2-201ENST00000502787 707 ntBASIC15.22■□□□□ 0.03
CCDC58Q4VC31 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 AC111152.3-201ENST00000569699 673 ntBASIC15.22■□□□□ 0.03
CCDC58Q4VC31 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC58Q4VC31 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 CD70-202ENST00000423145 881 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 COX11P1-201ENST00000489116 835 ntBASIC15.21■□□□□ 0.03
CCDC58Q4VC31 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC58Q4VC31 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC58Q4VC31 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.21■□□□□ 0.02
CCDC58Q4VC31 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
CCDC58Q4VC31 AL513523.2-202ENST00000427283 2040 ntBASIC15.21■□□□□ 0.02
CCDC58Q4VC31 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC15.2■□□□□ 0.02
CCDC58Q4VC31 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms