Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
USP41Q3LFD5 WASH6P-202ENST00000359512 1437 ntBASIC17.96■□□□□ 0.47
USP41Q3LFD5 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
USP41Q3LFD5 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP41Q3LFD5 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
USP41Q3LFD5 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
USP41Q3LFD5 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.46
USP41Q3LFD5 AL138688.1-201ENST00000624851 1594 ntBASIC17.96■□□□□ 0.46
USP41Q3LFD5 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 PMS2P4-201ENST00000412466 1052 ntBASIC17.95■□□□□ 0.46
USP41Q3LFD5 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 BCRP1-201ENST00000444246 691 ntBASIC17.95■□□□□ 0.46
USP41Q3LFD5 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 LINC01225-203ENST00000563550 1244 ntBASIC17.95■□□□□ 0.46
USP41Q3LFD5 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 MIR3909-201ENST00000579518 119 ntBASIC17.95■□□□□ 0.46
USP41Q3LFD5 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 AC005498.2-205ENST00000593218 784 ntBASIC17.95■□□□□ 0.46
USP41Q3LFD5 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP41Q3LFD5 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.95■□□□□ 0.46
USP41Q3LFD5 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.94■□□□□ 0.46
USP41Q3LFD5 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
USP41Q3LFD5 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.94■□□□□ 0.46
USP41Q3LFD5 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.94■□□□□ 0.46
USP41Q3LFD5 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 UXT-AS1-201ENST00000590504 1525 ntBASIC17.94■□□□□ 0.46
USP41Q3LFD5 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.94■□□□□ 0.46
USP41Q3LFD5 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.94■□□□□ 0.46
USP41Q3LFD5 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.94■□□□□ 0.46
USP41Q3LFD5 RBPMS2P1-201ENST00000437762 623 ntBASIC17.94■□□□□ 0.46
USP41Q3LFD5 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.94■□□□□ 0.46
USP41Q3LFD5 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.94■□□□□ 0.46
USP41Q3LFD5 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.94■□□□□ 0.46
USP41Q3LFD5 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
USP41Q3LFD5 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.94■□□□□ 0.46
USP41Q3LFD5 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.94■□□□□ 0.46
USP41Q3LFD5 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP41Q3LFD5 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 AC116353.5-201ENST00000638148 1699 ntBASIC17.93■□□□□ 0.46
USP41Q3LFD5 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 AL021920.2-201ENST00000624828 1351 ntBASIC17.93■□□□□ 0.46
USP41Q3LFD5 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 AC131009.4-201ENST00000624048 1740 ntBASIC17.93■□□□□ 0.46
USP41Q3LFD5 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 GPS2P2-201ENST00000430745 888 ntBASIC17.93■□□□□ 0.46
USP41Q3LFD5 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 AC069262.1-201ENST00000539058 672 ntBASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms