Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH6P52701 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH6P52701 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC23.17■■□□□ 1.3
MSH6P52701 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC23.17■■□□□ 1.3
MSH6P52701 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC23.17■■□□□ 1.3
MSH6P52701 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC23.17■■□□□ 1.3
MSH6P52701 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC23.17■■□□□ 1.3
MSH6P52701 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
MSH6P52701 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
MSH6P52701 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC23.17■■□□□ 1.3
MSH6P52701 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
MSH6P52701 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC23.17■■□□□ 1.3
MSH6P52701 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
MSH6P52701 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH6P52701 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC23.16■■□□□ 1.3
MSH6P52701 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH6P52701 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC23.16■■□□□ 1.3
MSH6P52701 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH6P52701 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC23.16■■□□□ 1.3
MSH6P52701 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH6P52701 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC23.16■■□□□ 1.3
MSH6P52701 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC23.16■■□□□ 1.3
MSH6P52701 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC23.16■■□□□ 1.3
MSH6P52701 TPRX2P-201ENST00000535362 881 ntBASIC23.16■■□□□ 1.3
MSH6P52701 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC23.16■■□□□ 1.3
MSH6P52701 AC123567.1-201ENST00000548294 1261 ntBASIC23.16■■□□□ 1.3
MSH6P52701 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC23.16■■□□□ 1.3
MSH6P52701 CYP2A7P1-201ENST00000595391 815 ntBASIC23.16■■□□□ 1.3
MSH6P52701 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC23.16■■□□□ 1.3
MSH6P52701 SRD5A3P1-201ENST00000603021 949 ntBASIC23.16■■□□□ 1.3
MSH6P52701 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH6P52701 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC23.16■■□□□ 1.3
MSH6P52701 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH6P52701 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH6P52701 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH6P52701 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH6P52701 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH6P52701 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC23.16■■□□□ 1.3
MSH6P52701 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
MSH6P52701 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
MSH6P52701 FLJ13224-201ENST00000313737 1514 ntBASIC23.16■■□□□ 1.3
MSH6P52701 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
MSH6P52701 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
MSH6P52701 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH6P52701 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH6P52701 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH6P52701 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC23.15■■□□□ 1.3
MSH6P52701 MEP1AP4-201ENST00000423244 1087 ntBASIC23.15■■□□□ 1.3
MSH6P52701 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
MSH6P52701 CROCCP4-201ENST00000457096 498 ntBASIC23.15■■□□□ 1.3
MSH6P52701 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
MSH6P52701 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC23.15■■□□□ 1.3
MSH6P52701 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC23.15■■□□□ 1.3
MSH6P52701 RN7SL219P-201ENST00000582872 296 ntBASIC23.15■■□□□ 1.3
MSH6P52701 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
MSH6P52701 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC23.15■■□□□ 1.3
MSH6P52701 TEX48-202ENST00000612244 662 ntTSL 3 BASIC23.15■■□□□ 1.3
MSH6P52701 MIR6869-201ENST00000619434 62 ntBASIC23.15■■□□□ 1.3
MSH6P52701 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC23.15■■□□□ 1.3
MSH6P52701 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH6P52701 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC23.15■■□□□ 1.3
MSH6P52701 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC23.15■■□□□ 1.3
MSH6P52701 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH6P52701 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
MSH6P52701 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
MSH6P52701 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC23.15■■□□□ 1.3
MSH6P52701 LYSMD4-203ENST00000378904 2122 ntBASIC23.15■■□□□ 1.3
MSH6P52701 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH6P52701 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH6P52701 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
MSH6P52701 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC23.15■■□□□ 1.3
MSH6P52701 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
MSH6P52701 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC23.15■■□□□ 1.3
MSH6P52701 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC23.15■■□□□ 1.3
MSH6P52701 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC23.14■■□□□ 1.3
MSH6P52701 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC23.14■■□□□ 1.3
MSH6P52701 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
MSH6P52701 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC23.14■■□□□ 1.3
MSH6P52701 CD74-212ENST00000524315 584 ntTSL 5 BASIC23.14■■□□□ 1.3
MSH6P52701 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC23.14■■□□□ 1.3
MSH6P52701 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.3
MSH6P52701 5S_rRNA.22-201ENST00000614916 106 ntBASIC23.14■■□□□ 1.3
MSH6P52701 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
MSH6P52701 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
MSH6P52701 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC23.14■■□□□ 1.3
MSH6P52701 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH6P52701 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC23.14■■□□□ 1.29
MSH6P52701 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH6P52701 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH6P52701 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH6P52701 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH6P52701 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
MSH6P52701 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH6P52701 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
MSH6P52701 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH6P52701 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC23.14■■□□□ 1.29
MSH6P52701 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH6P52701 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
MSH6P52701 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC23.14■■□□□ 1.29
MSH6P52701 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms