Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.18■□□□□ 0.34
HADHAP40939 AL139384.1-201ENST00000612143 3047 ntBASIC17.18■□□□□ 0.34
HADHAP40939 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HADHAP40939 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HADHAP40939 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.17■□□□□ 0.34
HADHAP40939 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
HADHAP40939 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
HADHAP40939 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.17■□□□□ 0.34
HADHAP40939 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
HADHAP40939 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
HADHAP40939 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.17■□□□□ 0.34
HADHAP40939 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.17■□□□□ 0.34
HADHAP40939 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
HADHAP40939 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.17■□□□□ 0.34
HADHAP40939 AC021087.4-201ENST00000563761 564 ntBASIC17.17■□□□□ 0.34
HADHAP40939 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
HADHAP40939 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.17■□□□□ 0.34
HADHAP40939 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.17■□□□□ 0.34
HADHAP40939 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HADHAP40939 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
HADHAP40939 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HADHAP40939 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.16■□□□□ 0.34
HADHAP40939 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 AC092068.3-201ENST00000587894 2016 ntBASIC17.16■□□□□ 0.34
HADHAP40939 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HADHAP40939 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.16■□□□□ 0.34
HADHAP40939 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
HADHAP40939 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.16■□□□□ 0.34
HADHAP40939 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.16■□□□□ 0.34
HADHAP40939 LAGE3P1-201ENST00000425356 484 ntBASIC17.16■□□□□ 0.34
HADHAP40939 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.16■□□□□ 0.34
HADHAP40939 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.16■□□□□ 0.34
HADHAP40939 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.16■□□□□ 0.34
HADHAP40939 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.16■□□□□ 0.34
HADHAP40939 AC006557.2-201ENST00000592985 1240 ntBASIC17.16■□□□□ 0.34
HADHAP40939 AC025062.2-201ENST00000605477 670 ntBASIC17.16■□□□□ 0.34
HADHAP40939 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HADHAP40939 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.16■□□□□ 0.34
HADHAP40939 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.16■□□□□ 0.34
HADHAP40939 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 AL603756.1-201ENST00000606511 2163 ntBASIC17.16■□□□□ 0.34
HADHAP40939 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 AL590787.1-201ENST00000568856 1315 ntBASIC17.16■□□□□ 0.34
HADHAP40939 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.16■□□□□ 0.34
HADHAP40939 FRMD8P1-201ENST00000440433 1524 ntBASIC17.16■□□□□ 0.34
HADHAP40939 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HADHAP40939 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HADHAP40939 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
HADHAP40939 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HADHAP40939 AC078925.2-201ENST00000624013 1973 ntBASIC17.15■□□□□ 0.34
HADHAP40939 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
HADHAP40939 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
HADHAP40939 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HADHAP40939 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HADHAP40939 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
HADHAP40939 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HADHAP40939 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HADHAP40939 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HADHAP40939 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms