Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.53■□□□□ 0.4
HOXA9P31269 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.53■□□□□ 0.4
HOXA9P31269 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.53■□□□□ 0.4
HOXA9P31269 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.53■□□□□ 0.4
HOXA9P31269 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.53■□□□□ 0.4
HOXA9P31269 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC17.53■□□□□ 0.4
HOXA9P31269 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.53■□□□□ 0.4
HOXA9P31269 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXA9P31269 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXA9P31269 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXA9P31269 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.53■□□□□ 0.4
HOXA9P31269 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HOXA9P31269 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXA9P31269 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.52■□□□□ 0.4
HOXA9P31269 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.52■□□□□ 0.4
HOXA9P31269 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HOXA9P31269 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.52■□□□□ 0.4
HOXA9P31269 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXA9P31269 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
HOXA9P31269 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HOXA9P31269 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.52■□□□□ 0.4
HOXA9P31269 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.52■□□□□ 0.4
HOXA9P31269 AC241585.1-201ENST00000433527 519 ntBASIC17.52■□□□□ 0.4
HOXA9P31269 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.52■□□□□ 0.4
HOXA9P31269 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.52■□□□□ 0.4
HOXA9P31269 RARRES2P9-201ENST00000565168 469 ntBASIC17.52■□□□□ 0.4
HOXA9P31269 AL138918.1-201ENST00000568306 659 ntBASIC17.52■□□□□ 0.4
HOXA9P31269 MIR4453-201ENST00000584019 89 ntBASIC17.52■□□□□ 0.4
HOXA9P31269 AC018529.1-201ENST00000613063 361 ntBASIC17.52■□□□□ 0.4
HOXA9P31269 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXA9P31269 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HOXA9P31269 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HOXA9P31269 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HOXA9P31269 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HOXA9P31269 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HOXA9P31269 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HOXA9P31269 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
HOXA9P31269 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.39
HOXA9P31269 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HOXA9P31269 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA9P31269 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HOXA9P31269 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.51■□□□□ 0.39
HOXA9P31269 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA9P31269 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HOXA9P31269 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.51■□□□□ 0.39
HOXA9P31269 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA9P31269 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HOXA9P31269 AC008764.6-201ENST00000595909 2069 ntBASIC17.51■□□□□ 0.39
HOXA9P31269 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.51■□□□□ 0.39
HOXA9P31269 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA9P31269 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA9P31269 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA9P31269 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA9P31269 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA9P31269 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.51■□□□□ 0.39
HOXA9P31269 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.51■□□□□ 0.39
HOXA9P31269 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.51■□□□□ 0.39
HOXA9P31269 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA9P31269 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.51■□□□□ 0.39
HOXA9P31269 LINC02560-201ENST00000596379 459 ntBASIC17.51■□□□□ 0.39
HOXA9P31269 AC073592.8-201ENST00000624126 511 ntBASIC17.51■□□□□ 0.39
HOXA9P31269 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA9P31269 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.51■□□□□ 0.39
HOXA9P31269 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA9P31269 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA9P31269 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA9P31269 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA9P31269 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA9P31269 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA9P31269 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA9P31269 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
HOXA9P31269 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA9P31269 LINC00896-202ENST00000609602 2128 ntBASIC17.5■□□□□ 0.39
HOXA9P31269 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.5■□□□□ 0.39
HOXA9P31269 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA9P31269 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA9P31269 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXA9P31269 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXA9P31269 AC004890.2-204ENST00000481968 304 ntBASIC17.5■□□□□ 0.39
HOXA9P31269 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.5■□□□□ 0.39
HOXA9P31269 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.5■□□□□ 0.39
HOXA9P31269 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.5■□□□□ 0.39
HOXA9P31269 AC124947.2-201ENST00000547118 1133 ntBASIC17.5■□□□□ 0.39
HOXA9P31269 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXA9P31269 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA9P31269 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.5■□□□□ 0.39
HOXA9P31269 AC007967.4-201ENST00000614700 386 ntBASIC17.5■□□□□ 0.39
HOXA9P31269 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXA9P31269 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA9P31269 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HOXA9P31269 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.5■□□□□ 0.39
HOXA9P31269 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA9P31269 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA9P31269 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
HOXA9P31269 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HOXA9P31269 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HOXA9P31269 AC063926.2-201ENST00000623766 1308 ntBASIC17.49■□□□□ 0.39
HOXA9P31269 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXA9P31269 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXA9P31269 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms