Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.68■□□□□ 0.26
CDH3P22223 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.68■□□□□ 0.26
CDH3P22223 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.68■□□□□ 0.26
CDH3P22223 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.68■□□□□ 0.26
CDH3P22223 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.68■□□□□ 0.26
CDH3P22223 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.68■□□□□ 0.26
CDH3P22223 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.68■□□□□ 0.26
CDH3P22223 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.68■□□□□ 0.26
CDH3P22223 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.68■□□□□ 0.26
CDH3P22223 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.68■□□□□ 0.26
CDH3P22223 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.68■□□□□ 0.26
CDH3P22223 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.68■□□□□ 0.26
CDH3P22223 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.68■□□□□ 0.26
CDH3P22223 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CDH3P22223 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CDH3P22223 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CDH3P22223 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.68■□□□□ 0.26
CDH3P22223 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.68■□□□□ 0.26
CDH3P22223 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.68■□□□□ 0.26
CDH3P22223 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CDH3P22223 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.67■□□□□ 0.26
CDH3P22223 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.67■□□□□ 0.26
CDH3P22223 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 AC133963.1-201ENST00000504166 1679 ntBASIC16.67■□□□□ 0.26
CDH3P22223 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.67■□□□□ 0.26
CDH3P22223 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.67■□□□□ 0.26
CDH3P22223 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.67■□□□□ 0.26
CDH3P22223 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.67■□□□□ 0.26
CDH3P22223 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.67■□□□□ 0.26
CDH3P22223 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CDH3P22223 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
CDH3P22223 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDH3P22223 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.66■□□□□ 0.26
CDH3P22223 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
CDH3P22223 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CDH3P22223 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
CDH3P22223 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.66■□□□□ 0.26
CDH3P22223 AL135999.2-201ENST00000622438 1686 ntBASIC16.66■□□□□ 0.26
CDH3P22223 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
CDH3P22223 LYSMD4-203ENST00000378904 2122 ntBASIC16.66■□□□□ 0.26
CDH3P22223 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.66■□□□□ 0.26
CDH3P22223 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.66■□□□□ 0.26
CDH3P22223 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 ACTG1P4-201ENST00000425123 1122 ntBASIC16.66■□□□□ 0.26
CDH3P22223 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.66■□□□□ 0.26
CDH3P22223 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 POLD2P1-201ENST00000511220 997 ntBASIC16.66■□□□□ 0.26
CDH3P22223 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.66■□□□□ 0.26
CDH3P22223 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CDH3P22223 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.66■□□□□ 0.26
CDH3P22223 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.66■□□□□ 0.26
CDH3P22223 AC034105.1-201ENST00000563488 319 ntBASIC16.66■□□□□ 0.26
CDH3P22223 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.66■□□□□ 0.26
CDH3P22223 TERC-201ENST00000602385 541 ntBASIC16.66■□□□□ 0.26
CDH3P22223 AL671883.3-201ENST00000603274 991 ntBASIC16.66■□□□□ 0.26
CDH3P22223 AL353135.1-201ENST00000606729 504 ntBASIC16.66■□□□□ 0.26
CDH3P22223 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CDH3P22223 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.66■□□□□ 0.26
CDH3P22223 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.66■□□□□ 0.26
CDH3P22223 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
CDH3P22223 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CDH3P22223 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.66■□□□□ 0.26
CDH3P22223 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDH3P22223 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms