Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.96■□□□□ 0.63
GGPS1O95749 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.96■□□□□ 0.63
GGPS1O95749 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.96■□□□□ 0.63
GGPS1O95749 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.96■□□□□ 0.63
GGPS1O95749 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.96■□□□□ 0.63
GGPS1O95749 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.96■□□□□ 0.63
GGPS1O95749 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.96■□□□□ 0.63
GGPS1O95749 AC009093.7-201ENST00000623853 1223 ntBASIC18.96■□□□□ 0.63
GGPS1O95749 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
GGPS1O95749 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.96■□□□□ 0.63
GGPS1O95749 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.96■□□□□ 0.63
GGPS1O95749 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
GGPS1O95749 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.96■□□□□ 0.63
GGPS1O95749 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
GGPS1O95749 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
GGPS1O95749 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
GGPS1O95749 CROCCP2-202ENST00000412962 2773 ntBASIC18.96■□□□□ 0.63
GGPS1O95749 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
GGPS1O95749 AKAP8P1-201ENST00000434743 1349 ntBASIC18.96■□□□□ 0.63
GGPS1O95749 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.95■□□□□ 0.62
GGPS1O95749 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.95■□□□□ 0.62
GGPS1O95749 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
GGPS1O95749 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.95■□□□□ 0.62
GGPS1O95749 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.95■□□□□ 0.62
GGPS1O95749 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.95■□□□□ 0.62
GGPS1O95749 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.95■□□□□ 0.62
GGPS1O95749 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
GGPS1O95749 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.95■□□□□ 0.62
GGPS1O95749 AC109635.5-201ENST00000533593 962 ntBASIC18.95■□□□□ 0.62
GGPS1O95749 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.95■□□□□ 0.62
GGPS1O95749 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.95■□□□□ 0.62
GGPS1O95749 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.95■□□□□ 0.62
GGPS1O95749 AC087641.1-201ENST00000557561 1021 ntBASIC18.95■□□□□ 0.62
GGPS1O95749 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.95■□□□□ 0.62
GGPS1O95749 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
GGPS1O95749 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
GGPS1O95749 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.95■□□□□ 0.62
GGPS1O95749 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.95■□□□□ 0.62
GGPS1O95749 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
GGPS1O95749 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
GGPS1O95749 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
GGPS1O95749 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
GGPS1O95749 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.94■□□□□ 0.62
GGPS1O95749 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.94■□□□□ 0.62
GGPS1O95749 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 RNU1-129P-201ENST00000384064 167 ntBASIC18.94■□□□□ 0.62
GGPS1O95749 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.94■□□□□ 0.62
GGPS1O95749 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.94■□□□□ 0.62
GGPS1O95749 AC092474.2-201ENST00000424288 719 ntBASIC18.94■□□□□ 0.62
GGPS1O95749 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.94■□□□□ 0.62
GGPS1O95749 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.94■□□□□ 0.62
GGPS1O95749 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.94■□□□□ 0.62
GGPS1O95749 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
GGPS1O95749 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.94■□□□□ 0.62
GGPS1O95749 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
GGPS1O95749 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.94■□□□□ 0.62
GGPS1O95749 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 AC025678.2-201ENST00000562061 970 ntBASIC18.94■□□□□ 0.62
GGPS1O95749 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.94■□□□□ 0.62
GGPS1O95749 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.94■□□□□ 0.62
GGPS1O95749 U1.21-201ENST00000580816 167 ntBASIC18.94■□□□□ 0.62
GGPS1O95749 MPDU1-223ENST00000582151 728 ntBASIC18.94■□□□□ 0.62
GGPS1O95749 AL031055.1-201ENST00000606362 631 ntBASIC18.94■□□□□ 0.62
GGPS1O95749 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.94■□□□□ 0.62
GGPS1O95749 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
GGPS1O95749 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
GGPS1O95749 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
GGPS1O95749 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
GGPS1O95749 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.93■□□□□ 0.62
GGPS1O95749 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
GGPS1O95749 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
GGPS1O95749 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms