Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CUEDC1Q9NWM3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CUEDC1Q9NWM3 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CUEDC1Q9NWM3 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC23.23■■□□□ 1.31
CUEDC1Q9NWM3 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CUEDC1Q9NWM3 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.23■■□□□ 1.31
CUEDC1Q9NWM3 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
CUEDC1Q9NWM3 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC23.23■■□□□ 1.31
CUEDC1Q9NWM3 AC145676.1-201ENST00000514988 2004 ntBASIC23.23■■□□□ 1.31
CUEDC1Q9NWM3 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CUEDC1Q9NWM3 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CUEDC1Q9NWM3 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.21■■□□□ 1.31
CUEDC1Q9NWM3 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CUEDC1Q9NWM3 KRT18P60-201ENST00000312876 1297 ntBASIC23.21■■□□□ 1.31
CUEDC1Q9NWM3 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CUEDC1Q9NWM3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CUEDC1Q9NWM3 DUSP8P4-201ENST00000399538 1761 ntBASIC23.21■■□□□ 1.31
CUEDC1Q9NWM3 AC010501.1-201ENST00000606270 1962 ntBASIC23.21■■□□□ 1.31
CUEDC1Q9NWM3 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.21■■□□□ 1.31
CUEDC1Q9NWM3 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CUEDC1Q9NWM3 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.2■■□□□ 1.3
CUEDC1Q9NWM3 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CUEDC1Q9NWM3 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC23.2■■□□□ 1.3
CUEDC1Q9NWM3 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CUEDC1Q9NWM3 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CUEDC1Q9NWM3 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.19■■□□□ 1.3
CUEDC1Q9NWM3 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CUEDC1Q9NWM3 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CUEDC1Q9NWM3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CUEDC1Q9NWM3 AC096887.2-201ENST00000623443 1957 ntBASIC23.19■■□□□ 1.3
CUEDC1Q9NWM3 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CUEDC1Q9NWM3 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.19■■□□□ 1.3
CUEDC1Q9NWM3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CUEDC1Q9NWM3 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CUEDC1Q9NWM3 TSPY13P-201ENST00000338964 914 ntBASIC23.18■■□□□ 1.3
CUEDC1Q9NWM3 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.18■■□□□ 1.3
CUEDC1Q9NWM3 SPCS2P3-201ENST00000500401 656 ntBASIC23.18■■□□□ 1.3
CUEDC1Q9NWM3 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC23.18■■□□□ 1.3
CUEDC1Q9NWM3 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC23.18■■□□□ 1.3
CUEDC1Q9NWM3 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CUEDC1Q9NWM3 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.18■■□□□ 1.3
CUEDC1Q9NWM3 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CUEDC1Q9NWM3 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CUEDC1Q9NWM3 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CUEDC1Q9NWM3 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC23.17■■□□□ 1.3
CUEDC1Q9NWM3 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CUEDC1Q9NWM3 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC23.17■■□□□ 1.3
CUEDC1Q9NWM3 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC23.17■■□□□ 1.3
CUEDC1Q9NWM3 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CUEDC1Q9NWM3 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CUEDC1Q9NWM3 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CUEDC1Q9NWM3 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CUEDC1Q9NWM3 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CUEDC1Q9NWM3 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CUEDC1Q9NWM3 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.15■■□□□ 1.3
CUEDC1Q9NWM3 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CUEDC1Q9NWM3 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
CUEDC1Q9NWM3 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CUEDC1Q9NWM3 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
CUEDC1Q9NWM3 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CUEDC1Q9NWM3 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.14■■□□□ 1.3
CUEDC1Q9NWM3 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CUEDC1Q9NWM3 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.14■■□□□ 1.29
CUEDC1Q9NWM3 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
CUEDC1Q9NWM3 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC23.14■■□□□ 1.29
CUEDC1Q9NWM3 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
CUEDC1Q9NWM3 AC129492.7-201ENST00000622992 756 ntBASIC23.14■■□□□ 1.29
CUEDC1Q9NWM3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.14■■□□□ 1.29
CUEDC1Q9NWM3 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.14■■□□□ 1.29
CUEDC1Q9NWM3 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
CUEDC1Q9NWM3 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC23.14■■□□□ 1.29
CUEDC1Q9NWM3 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
CUEDC1Q9NWM3 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.13■■□□□ 1.29
CUEDC1Q9NWM3 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CUEDC1Q9NWM3 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CUEDC1Q9NWM3 DUX4L9-201ENST00000449051 1259 ntBASIC23.13■■□□□ 1.29
CUEDC1Q9NWM3 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.13■■□□□ 1.29
CUEDC1Q9NWM3 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CUEDC1Q9NWM3 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CUEDC1Q9NWM3 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
CUEDC1Q9NWM3 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CUEDC1Q9NWM3 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
CUEDC1Q9NWM3 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CUEDC1Q9NWM3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.12■■□□□ 1.29
CUEDC1Q9NWM3 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC23.11■■□□□ 1.29
CUEDC1Q9NWM3 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
CUEDC1Q9NWM3 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC23.11■■□□□ 1.29
CUEDC1Q9NWM3 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CUEDC1Q9NWM3 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CUEDC1Q9NWM3 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
CUEDC1Q9NWM3 AC135731.1-201ENST00000569415 2548 ntBASIC23.1■■□□□ 1.29
CUEDC1Q9NWM3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CUEDC1Q9NWM3 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
CUEDC1Q9NWM3 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CUEDC1Q9NWM3 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CUEDC1Q9NWM3 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CUEDC1Q9NWM3 RARRES2P1-201ENST00000474487 481 ntBASIC23.09■■□□□ 1.29
CUEDC1Q9NWM3 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC23.09■■□□□ 1.29
CUEDC1Q9NWM3 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC23.09■■□□□ 1.29
CUEDC1Q9NWM3 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms