Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
USP44Q9H0E7 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
USP44Q9H0E7 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC30.3■■■□□ 2.44
USP44Q9H0E7 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC30.3■■■□□ 2.44
USP44Q9H0E7 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
USP44Q9H0E7 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
USP44Q9H0E7 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
USP44Q9H0E7 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
USP44Q9H0E7 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
USP44Q9H0E7 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
USP44Q9H0E7 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
USP44Q9H0E7 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
USP44Q9H0E7 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC30.28■■■□□ 2.44
USP44Q9H0E7 AC092803.2-201ENST00000564287 1899 ntBASIC30.28■■■□□ 2.44
USP44Q9H0E7 IDNK-203ENST00000405990 629 ntTSL 2 BASIC30.28■■■□□ 2.44
USP44Q9H0E7 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC30.28■■■□□ 2.44
USP44Q9H0E7 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
USP44Q9H0E7 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
USP44Q9H0E7 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC30.28■■■□□ 2.44
USP44Q9H0E7 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
USP44Q9H0E7 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
USP44Q9H0E7 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
USP44Q9H0E7 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
USP44Q9H0E7 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
USP44Q9H0E7 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC30.26■■■□□ 2.43
USP44Q9H0E7 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
USP44Q9H0E7 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
USP44Q9H0E7 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.43
USP44Q9H0E7 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC30.25■■■□□ 2.43
USP44Q9H0E7 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
USP44Q9H0E7 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC30.25■■■□□ 2.43
USP44Q9H0E7 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC30.25■■■□□ 2.43
USP44Q9H0E7 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC30.25■■■□□ 2.43
USP44Q9H0E7 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC30.24■■■□□ 2.43
USP44Q9H0E7 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
USP44Q9H0E7 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC30.24■■■□□ 2.43
USP44Q9H0E7 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC30.24■■■□□ 2.43
USP44Q9H0E7 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC30.24■■■□□ 2.43
USP44Q9H0E7 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC30.24■■■□□ 2.43
USP44Q9H0E7 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC30.24■■■□□ 2.43
USP44Q9H0E7 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
USP44Q9H0E7 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
USP44Q9H0E7 AC091060.1-201ENST00000623524 1766 ntBASIC30.23■■■□□ 2.43
USP44Q9H0E7 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
USP44Q9H0E7 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC30.23■■■□□ 2.43
USP44Q9H0E7 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC30.23■■■□□ 2.43
USP44Q9H0E7 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC30.23■■■□□ 2.43
USP44Q9H0E7 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
USP44Q9H0E7 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC30.22■■■□□ 2.43
USP44Q9H0E7 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
USP44Q9H0E7 AC096887.2-201ENST00000623443 1957 ntBASIC30.22■■■□□ 2.43
USP44Q9H0E7 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
USP44Q9H0E7 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
USP44Q9H0E7 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC30.21■■■□□ 2.43
USP44Q9H0E7 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC30.21■■■□□ 2.43
USP44Q9H0E7 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC30.21■■■□□ 2.43
USP44Q9H0E7 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
USP44Q9H0E7 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC30.21■■■□□ 2.43
USP44Q9H0E7 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC30.2■■■□□ 2.43
USP44Q9H0E7 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC30.2■■■□□ 2.43
USP44Q9H0E7 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
USP44Q9H0E7 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC30.2■■■□□ 2.43
USP44Q9H0E7 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
USP44Q9H0E7 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC30.19■■■□□ 2.42
USP44Q9H0E7 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
USP44Q9H0E7 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
USP44Q9H0E7 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
USP44Q9H0E7 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.18■■■□□ 2.42
USP44Q9H0E7 AC010501.1-201ENST00000606270 1962 ntBASIC30.18■■■□□ 2.42
USP44Q9H0E7 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC30.18■■■□□ 2.42
USP44Q9H0E7 RPS2P7-201ENST00000447334 885 ntBASIC30.18■■■□□ 2.42
USP44Q9H0E7 AC087393.1-201ENST00000582896 145 ntBASIC30.18■■■□□ 2.42
USP44Q9H0E7 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC30.18■■■□□ 2.42
USP44Q9H0E7 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC30.18■■■□□ 2.42
USP44Q9H0E7 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC30.18■■■□□ 2.42
USP44Q9H0E7 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
USP44Q9H0E7 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC30.17■■■□□ 2.42
USP44Q9H0E7 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC30.17■■■□□ 2.42
USP44Q9H0E7 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC30.17■■■□□ 2.42
USP44Q9H0E7 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC30.17■■■□□ 2.42
USP44Q9H0E7 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
USP44Q9H0E7 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
USP44Q9H0E7 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC30.16■■■□□ 2.42
USP44Q9H0E7 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
USP44Q9H0E7 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC30.16■■■□□ 2.42
USP44Q9H0E7 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
USP44Q9H0E7 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
USP44Q9H0E7 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
USP44Q9H0E7 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC30.14■■■□□ 2.42
USP44Q9H0E7 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC30.14■■■□□ 2.41
USP44Q9H0E7 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC30.14■■■□□ 2.41
USP44Q9H0E7 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
USP44Q9H0E7 PVT1_1.1-201ENST00000615125 194 ntBASIC30.13■■■□□ 2.41
USP44Q9H0E7 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
USP44Q9H0E7 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
USP44Q9H0E7 SNAI3-AS1-204ENST00000567997 2048 ntBASIC30.12■■■□□ 2.41
USP44Q9H0E7 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
USP44Q9H0E7 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
USP44Q9H0E7 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC30.12■■■□□ 2.41
USP44Q9H0E7 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC30.12■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 181.3 ms