Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC24.94■■□□□ 1.58
SLC44A3Q8N4M1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
SLC44A3Q8N4M1 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.93■■□□□ 1.58
SLC44A3Q8N4M1 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SLC44A3Q8N4M1 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.93■■□□□ 1.58
SLC44A3Q8N4M1 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SLC44A3Q8N4M1 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.93■■□□□ 1.58
SLC44A3Q8N4M1 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC24.93■■□□□ 1.58
SLC44A3Q8N4M1 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
SLC44A3Q8N4M1 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SLC44A3Q8N4M1 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC24.93■■□□□ 1.58
SLC44A3Q8N4M1 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
SLC44A3Q8N4M1 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
SLC44A3Q8N4M1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
SLC44A3Q8N4M1 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC24.92■■□□□ 1.58
SLC44A3Q8N4M1 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC24.92■■□□□ 1.58
SLC44A3Q8N4M1 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC24.92■■□□□ 1.58
SLC44A3Q8N4M1 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.92■■□□□ 1.58
SLC44A3Q8N4M1 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC24.92■■□□□ 1.58
SLC44A3Q8N4M1 AC120024.1-201ENST00000562672 995 ntBASIC24.92■■□□□ 1.58
SLC44A3Q8N4M1 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC24.92■■□□□ 1.58
SLC44A3Q8N4M1 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
SLC44A3Q8N4M1 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SLC44A3Q8N4M1 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC24.91■■□□□ 1.58
SLC44A3Q8N4M1 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SLC44A3Q8N4M1 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
SLC44A3Q8N4M1 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SLC44A3Q8N4M1 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC24.9■■□□□ 1.58
SLC44A3Q8N4M1 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC24.9■■□□□ 1.58
SLC44A3Q8N4M1 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
SLC44A3Q8N4M1 TRIR-202ENST00000588213 841 ntTSL 3 BASIC24.9■■□□□ 1.58
SLC44A3Q8N4M1 AC092028.1-203ENST00000608262 953 ntBASIC24.9■■□□□ 1.58
SLC44A3Q8N4M1 RALB-208ENST00000631312 311 ntTSL 5 BASIC24.9■■□□□ 1.58
SLC44A3Q8N4M1 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SLC44A3Q8N4M1 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
SLC44A3Q8N4M1 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
SLC44A3Q8N4M1 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC24.89■■□□□ 1.58
SLC44A3Q8N4M1 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
SLC44A3Q8N4M1 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC24.89■■□□□ 1.58
SLC44A3Q8N4M1 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC24.89■■□□□ 1.58
SLC44A3Q8N4M1 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC24.89■■□□□ 1.58
SLC44A3Q8N4M1 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC24.89■■□□□ 1.57
SLC44A3Q8N4M1 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SLC44A3Q8N4M1 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SLC44A3Q8N4M1 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC24.88■■□□□ 1.57
SLC44A3Q8N4M1 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
SLC44A3Q8N4M1 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.87■■□□□ 1.57
SLC44A3Q8N4M1 RPP21-222ENST00000433076 577 ntTSL 2 BASIC24.87■■□□□ 1.57
SLC44A3Q8N4M1 AC131281.2-201ENST00000520478 145 ntBASIC24.87■■□□□ 1.57
SLC44A3Q8N4M1 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC24.87■■□□□ 1.57
SLC44A3Q8N4M1 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
SLC44A3Q8N4M1 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
SLC44A3Q8N4M1 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC24.86■■□□□ 1.57
SLC44A3Q8N4M1 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
SLC44A3Q8N4M1 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC24.86■■□□□ 1.57
SLC44A3Q8N4M1 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
SLC44A3Q8N4M1 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC24.86■■□□□ 1.57
SLC44A3Q8N4M1 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
SLC44A3Q8N4M1 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.86■■□□□ 1.57
SLC44A3Q8N4M1 SRR-208ENST00000576848 588 ntTSL 4 BASIC24.86■■□□□ 1.57
SLC44A3Q8N4M1 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
SLC44A3Q8N4M1 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC24.85■■□□□ 1.57
SLC44A3Q8N4M1 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC24.85■■□□□ 1.57
SLC44A3Q8N4M1 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
SLC44A3Q8N4M1 AL449106.1-201ENST00000608517 1980 ntBASIC24.84■■□□□ 1.57
SLC44A3Q8N4M1 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC24.84■■□□□ 1.57
SLC44A3Q8N4M1 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC24.84■■□□□ 1.57
SLC44A3Q8N4M1 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC24.84■■□□□ 1.57
SLC44A3Q8N4M1 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
SLC44A3Q8N4M1 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
SLC44A3Q8N4M1 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
SLC44A3Q8N4M1 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
SLC44A3Q8N4M1 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
SLC44A3Q8N4M1 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
SLC44A3Q8N4M1 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC24.81■■□□□ 1.56
SLC44A3Q8N4M1 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SLC44A3Q8N4M1 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC24.81■■□□□ 1.56
SLC44A3Q8N4M1 AL136116.3-201ENST00000402907 1138 ntBASIC24.81■■□□□ 1.56
SLC44A3Q8N4M1 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SLC44A3Q8N4M1 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SLC44A3Q8N4M1 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
SLC44A3Q8N4M1 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
SLC44A3Q8N4M1 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
SLC44A3Q8N4M1 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC24.8■■□□□ 1.56
SLC44A3Q8N4M1 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC24.8■■□□□ 1.56
SLC44A3Q8N4M1 ABCB10P1-201ENST00000614297 2181 ntBASIC24.8■■□□□ 1.56
SLC44A3Q8N4M1 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
SLC44A3Q8N4M1 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
SLC44A3Q8N4M1 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
SLC44A3Q8N4M1 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC24.79■■□□□ 1.56
SLC44A3Q8N4M1 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC24.79■■□□□ 1.56
SLC44A3Q8N4M1 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
SLC44A3Q8N4M1 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC24.78■■□□□ 1.56
SLC44A3Q8N4M1 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC24.78■■□□□ 1.56
SLC44A3Q8N4M1 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC24.78■■□□□ 1.56
SLC44A3Q8N4M1 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
SLC44A3Q8N4M1 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
SLC44A3Q8N4M1 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.78■■□□□ 1.56
SLC44A3Q8N4M1 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC24.78■■□□□ 1.56
SLC44A3Q8N4M1 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC24.77■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms