Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USF3Q68DE3 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.7■□□□□ 0.9
USF3Q68DE3 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USF3Q68DE3 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.7■□□□□ 0.9
USF3Q68DE3 AC019069.1-201ENST00000610008 1333 ntBASIC20.69■□□□□ 0.9
USF3Q68DE3 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.69■□□□□ 0.9
USF3Q68DE3 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.69■□□□□ 0.9
USF3Q68DE3 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.69■□□□□ 0.9
USF3Q68DE3 AL031848.2-201ENST00000607670 837 ntBASIC20.69■□□□□ 0.9
USF3Q68DE3 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USF3Q68DE3 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
USF3Q68DE3 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
USF3Q68DE3 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.68■□□□□ 0.9
USF3Q68DE3 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USF3Q68DE3 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USF3Q68DE3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USF3Q68DE3 AC087393.1-201ENST00000582896 145 ntBASIC20.67■□□□□ 0.9
USF3Q68DE3 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USF3Q68DE3 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
USF3Q68DE3 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USF3Q68DE3 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USF3Q68DE3 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
USF3Q68DE3 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USF3Q68DE3 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USF3Q68DE3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USF3Q68DE3 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.66■□□□□ 0.9
USF3Q68DE3 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USF3Q68DE3 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USF3Q68DE3 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.65■□□□□ 0.9
USF3Q68DE3 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USF3Q68DE3 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USF3Q68DE3 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.65■□□□□ 0.9
USF3Q68DE3 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USF3Q68DE3 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
USF3Q68DE3 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
USF3Q68DE3 AL449106.1-201ENST00000608517 1980 ntBASIC20.65■□□□□ 0.9
USF3Q68DE3 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
USF3Q68DE3 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
USF3Q68DE3 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USF3Q68DE3 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
USF3Q68DE3 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
USF3Q68DE3 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
USF3Q68DE3 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC20.64■□□□□ 0.89
USF3Q68DE3 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USF3Q68DE3 AL356441.2-201ENST00000443009 864 ntBASIC20.64■□□□□ 0.89
USF3Q68DE3 AC239859.2-201ENST00000444165 318 ntBASIC20.64■□□□□ 0.89
USF3Q68DE3 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.64■□□□□ 0.89
USF3Q68DE3 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.64■□□□□ 0.89
USF3Q68DE3 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USF3Q68DE3 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USF3Q68DE3 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.64■□□□□ 0.89
USF3Q68DE3 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.63■□□□□ 0.89
USF3Q68DE3 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
USF3Q68DE3 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.63■□□□□ 0.89
USF3Q68DE3 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.63■□□□□ 0.89
USF3Q68DE3 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
USF3Q68DE3 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
USF3Q68DE3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.63■□□□□ 0.89
USF3Q68DE3 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.62■□□□□ 0.89
USF3Q68DE3 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USF3Q68DE3 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USF3Q68DE3 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
USF3Q68DE3 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF3Q68DE3 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USF3Q68DE3 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USF3Q68DE3 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.61■□□□□ 0.89
USF3Q68DE3 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.6■□□□□ 0.89
USF3Q68DE3 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USF3Q68DE3 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USF3Q68DE3 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USF3Q68DE3 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USF3Q68DE3 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.6■□□□□ 0.89
USF3Q68DE3 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.6■□□□□ 0.89
USF3Q68DE3 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.59■□□□□ 0.89
USF3Q68DE3 RPS2P7-201ENST00000447334 885 ntBASIC20.59■□□□□ 0.89
USF3Q68DE3 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.59■□□□□ 0.89
USF3Q68DE3 Z92544.1-202ENST00000571933 1220 ntBASIC20.59■□□□□ 0.89
USF3Q68DE3 AC019171.1-201ENST00000601251 1056 ntBASIC20.59■□□□□ 0.89
USF3Q68DE3 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.59■□□□□ 0.89
USF3Q68DE3 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
USF3Q68DE3 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.59■□□□□ 0.89
USF3Q68DE3 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
USF3Q68DE3 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.59■□□□□ 0.89
USF3Q68DE3 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
USF3Q68DE3 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USF3Q68DE3 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.58■□□□□ 0.89
USF3Q68DE3 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
USF3Q68DE3 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
USF3Q68DE3 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.58■□□□□ 0.89
USF3Q68DE3 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
USF3Q68DE3 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
USF3Q68DE3 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
USF3Q68DE3 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.58■□□□□ 0.88
USF3Q68DE3 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USF3Q68DE3 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.57■□□□□ 0.88
USF3Q68DE3 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USF3Q68DE3 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USF3Q68DE3 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.57■□□□□ 0.88
USF3Q68DE3 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USF3Q68DE3 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms