Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC29.96■■■□□ 2.39
CCDC88AQ3V6T2 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
CCDC88AQ3V6T2 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
CCDC88AQ3V6T2 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC29.96■■■□□ 2.39
CCDC88AQ3V6T2 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
CCDC88AQ3V6T2 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC29.95■■■□□ 2.39
CCDC88AQ3V6T2 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC29.95■■■□□ 2.39
CCDC88AQ3V6T2 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC29.95■■■□□ 2.39
CCDC88AQ3V6T2 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC29.95■■■□□ 2.39
CCDC88AQ3V6T2 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC29.95■■■□□ 2.38
CCDC88AQ3V6T2 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CCDC88AQ3V6T2 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC29.94■■■□□ 2.38
CCDC88AQ3V6T2 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC29.94■■■□□ 2.38
CCDC88AQ3V6T2 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
CCDC88AQ3V6T2 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC29.94■■■□□ 2.38
CCDC88AQ3V6T2 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC29.94■■■□□ 2.38
CCDC88AQ3V6T2 AC139426.1-201ENST00000568218 2529 ntBASIC29.93■■■□□ 2.38
CCDC88AQ3V6T2 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC29.93■■■□□ 2.38
CCDC88AQ3V6T2 RARRES2P6-201ENST00000567333 442 ntBASIC29.93■■■□□ 2.38
CCDC88AQ3V6T2 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC29.93■■■□□ 2.38
CCDC88AQ3V6T2 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC29.93■■■□□ 2.38
CCDC88AQ3V6T2 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC29.93■■■□□ 2.38
CCDC88AQ3V6T2 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
CCDC88AQ3V6T2 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
CCDC88AQ3V6T2 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC29.93■■■□□ 2.38
CCDC88AQ3V6T2 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC29.92■■■□□ 2.38
CCDC88AQ3V6T2 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC29.92■■■□□ 2.38
CCDC88AQ3V6T2 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC29.92■■■□□ 2.38
CCDC88AQ3V6T2 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
CCDC88AQ3V6T2 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
CCDC88AQ3V6T2 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC29.91■■■□□ 2.38
CCDC88AQ3V6T2 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC29.91■■■□□ 2.38
CCDC88AQ3V6T2 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC29.91■■■□□ 2.38
CCDC88AQ3V6T2 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC29.91■■■□□ 2.38
CCDC88AQ3V6T2 AL136116.3-201ENST00000402907 1138 ntBASIC29.9■■■□□ 2.38
CCDC88AQ3V6T2 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC29.9■■■□□ 2.38
CCDC88AQ3V6T2 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
CCDC88AQ3V6T2 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC29.9■■■□□ 2.38
CCDC88AQ3V6T2 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
CCDC88AQ3V6T2 LINC01003-201ENST00000564834 1764 ntBASIC29.89■■■□□ 2.38
CCDC88AQ3V6T2 AC137630.3-201ENST00000607245 391 ntBASIC29.89■■■□□ 2.38
CCDC88AQ3V6T2 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
CCDC88AQ3V6T2 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC29.89■■■□□ 2.37
CCDC88AQ3V6T2 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC29.89■■■□□ 2.37
CCDC88AQ3V6T2 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC29.89■■■□□ 2.37
CCDC88AQ3V6T2 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC29.88■■■□□ 2.37
CCDC88AQ3V6T2 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
CCDC88AQ3V6T2 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC29.88■■■□□ 2.37
CCDC88AQ3V6T2 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
CCDC88AQ3V6T2 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
CCDC88AQ3V6T2 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC29.87■■■□□ 2.37
CCDC88AQ3V6T2 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC29.87■■■□□ 2.37
CCDC88AQ3V6T2 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
CCDC88AQ3V6T2 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
CCDC88AQ3V6T2 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC29.87■■■□□ 2.37
CCDC88AQ3V6T2 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CCDC88AQ3V6T2 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CCDC88AQ3V6T2 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC29.86■■■□□ 2.37
CCDC88AQ3V6T2 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC29.86■■■□□ 2.37
CCDC88AQ3V6T2 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CCDC88AQ3V6T2 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
CCDC88AQ3V6T2 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
CCDC88AQ3V6T2 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC29.84■■■□□ 2.37
CCDC88AQ3V6T2 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CCDC88AQ3V6T2 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC29.84■■■□□ 2.37
CCDC88AQ3V6T2 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC29.84■■■□□ 2.37
CCDC88AQ3V6T2 KRT18P24-201ENST00000344739 1156 ntBASIC29.83■■■□□ 2.37
CCDC88AQ3V6T2 TSPY9P-201ENST00000440215 945 ntBASIC29.83■■■□□ 2.37
CCDC88AQ3V6T2 TSPY11P-201ENST00000442607 1045 ntBASIC29.83■■■□□ 2.37
CCDC88AQ3V6T2 MIR4466-201ENST00000606121 54 ntBASIC29.83■■■□□ 2.37
CCDC88AQ3V6T2 AC021242.3-201ENST00000607598 1377 ntBASIC29.82■■■□□ 2.37
CCDC88AQ3V6T2 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC29.82■■■□□ 2.37
CCDC88AQ3V6T2 AL117332.1-201ENST00000622628 974 ntBASIC29.82■■■□□ 2.37
CCDC88AQ3V6T2 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
CCDC88AQ3V6T2 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC29.82■■■□□ 2.36
CCDC88AQ3V6T2 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC29.82■■■□□ 2.36
CCDC88AQ3V6T2 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC29.82■■■□□ 2.36
CCDC88AQ3V6T2 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CCDC88AQ3V6T2 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CCDC88AQ3V6T2 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC29.81■■■□□ 2.36
CCDC88AQ3V6T2 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC29.8■■■□□ 2.36
CCDC88AQ3V6T2 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
CCDC88AQ3V6T2 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC29.8■■■□□ 2.36
CCDC88AQ3V6T2 QDPR-206ENST00000508623 601 ntTSL 3 BASIC29.8■■■□□ 2.36
CCDC88AQ3V6T2 MIR4281-201ENST00000580852 62 ntBASIC29.8■■■□□ 2.36
CCDC88AQ3V6T2 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CCDC88AQ3V6T2 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
CCDC88AQ3V6T2 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC29.79■■■□□ 2.36
CCDC88AQ3V6T2 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC29.79■■■□□ 2.36
CCDC88AQ3V6T2 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC29.79■■■□□ 2.36
CCDC88AQ3V6T2 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC29.78■■■□□ 2.36
CCDC88AQ3V6T2 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC29.78■■■□□ 2.36
CCDC88AQ3V6T2 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CCDC88AQ3V6T2 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC29.78■■■□□ 2.36
CCDC88AQ3V6T2 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
CCDC88AQ3V6T2 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CCDC88AQ3V6T2 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC29.78■■■□□ 2.36
CCDC88AQ3V6T2 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CCDC88AQ3V6T2 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC29.77■■■□□ 2.36
CCDC88AQ3V6T2 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC29.77■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms