Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.25■□□□□ 0.67
CX3CL1P78423 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.25■□□□□ 0.67
CX3CL1P78423 AC007029.1-201ENST00000604183 313 ntBASIC19.25■□□□□ 0.67
CX3CL1P78423 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CX3CL1P78423 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.24■□□□□ 0.67
CX3CL1P78423 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
CX3CL1P78423 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CX3CL1P78423 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CX3CL1P78423 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CX3CL1P78423 RP9P-202ENST00000450133 1212 ntBASIC19.24■□□□□ 0.67
CX3CL1P78423 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.24■□□□□ 0.67
CX3CL1P78423 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CX3CL1P78423 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CX3CL1P78423 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CX3CL1P78423 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CX3CL1P78423 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CX3CL1P78423 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CX3CL1P78423 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CX3CL1P78423 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CX3CL1P78423 AC145676.1-201ENST00000514988 2004 ntBASIC19.23■□□□□ 0.67
CX3CL1P78423 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CX3CL1P78423 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.23■□□□□ 0.67
CX3CL1P78423 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CX3CL1P78423 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CX3CL1P78423 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CX3CL1P78423 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.22■□□□□ 0.67
CX3CL1P78423 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CX3CL1P78423 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
CX3CL1P78423 AC093536.1-201ENST00000569153 554 ntBASIC19.21■□□□□ 0.67
CX3CL1P78423 AC093323.1-202ENST00000635031 2045 ntBASIC19.21■□□□□ 0.67
CX3CL1P78423 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CX3CL1P78423 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CX3CL1P78423 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC19.21■□□□□ 0.67
CX3CL1P78423 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC19.2■□□□□ 0.66
CX3CL1P78423 RARRES2P2-201ENST00000394842 485 ntBASIC19.2■□□□□ 0.66
CX3CL1P78423 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.2■□□□□ 0.66
CX3CL1P78423 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CL1P78423 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CL1P78423 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CL1P78423 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CX3CL1P78423 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CL1P78423 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CX3CL1P78423 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.19■□□□□ 0.66
CX3CL1P78423 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CL1P78423 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CL1P78423 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CL1P78423 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.19■□□□□ 0.66
CX3CL1P78423 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CL1P78423 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CL1P78423 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.19■□□□□ 0.66
CX3CL1P78423 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CL1P78423 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.19■□□□□ 0.66
CX3CL1P78423 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CX3CL1P78423 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.19■□□□□ 0.66
CX3CL1P78423 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.18■□□□□ 0.66
CX3CL1P78423 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CL1P78423 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CL1P78423 ERN1-208ENST00000606895 2068 ntBASIC19.18■□□□□ 0.66
CX3CL1P78423 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CL1P78423 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC19.18■□□□□ 0.66
CX3CL1P78423 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CL1P78423 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CX3CL1P78423 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CL1P78423 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CX3CL1P78423 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.18■□□□□ 0.66
CX3CL1P78423 DUSP8P4-201ENST00000399538 1761 ntBASIC19.18■□□□□ 0.66
CX3CL1P78423 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CX3CL1P78423 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.18■□□□□ 0.66
CX3CL1P78423 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CL1P78423 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CL1P78423 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CL1P78423 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CL1P78423 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CL1P78423 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CL1P78423 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CL1P78423 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.17■□□□□ 0.66
CX3CL1P78423 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.17■□□□□ 0.66
CX3CL1P78423 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CX3CL1P78423 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CX3CL1P78423 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
CX3CL1P78423 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CX3CL1P78423 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19.16■□□□□ 0.66
CX3CL1P78423 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CX3CL1P78423 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CX3CL1P78423 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CX3CL1P78423 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
CX3CL1P78423 AC010501.1-201ENST00000606270 1962 ntBASIC19.15■□□□□ 0.66
CX3CL1P78423 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CX3CL1P78423 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CX3CL1P78423 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.14■□□□□ 0.65
CX3CL1P78423 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CX3CL1P78423 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.14■□□□□ 0.65
CX3CL1P78423 AC026202.3-201ENST00000600805 1127 ntBASIC19.14■□□□□ 0.65
CX3CL1P78423 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CX3CL1P78423 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CX3CL1P78423 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC19.14■□□□□ 0.65
CX3CL1P78423 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.14■□□□□ 0.65
CX3CL1P78423 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CX3CL1P78423 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CX3CL1P78423 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms