Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.38■□□□□ 0.69
CDX1P47902 AC018358.1-201ENST00000631079 1402 ntBASIC19.38■□□□□ 0.69
CDX1P47902 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.37■□□□□ 0.69
CDX1P47902 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CDX1P47902 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CDX1P47902 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CDX1P47902 AC092296.2-201ENST00000589470 999 ntBASIC19.37■□□□□ 0.69
CDX1P47902 MED25-210ENST00000612854 801 ntTSL 5 BASIC19.37■□□□□ 0.69
CDX1P47902 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CDX1P47902 MED25-214ENST00000622402 642 ntTSL 5 BASIC19.37■□□□□ 0.69
CDX1P47902 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CDX1P47902 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CDX1P47902 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CDX1P47902 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
CDX1P47902 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CDX1P47902 ABHD17AP5-201ENST00000580133 923 ntBASIC19.36■□□□□ 0.69
CDX1P47902 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CDX1P47902 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.36■□□□□ 0.69
CDX1P47902 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CDX1P47902 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CDX1P47902 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.36■□□□□ 0.69
CDX1P47902 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.36■□□□□ 0.69
CDX1P47902 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CDX1P47902 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CDX1P47902 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CDX1P47902 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CDX1P47902 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
CDX1P47902 ECEL1P2-201ENST00000461596 1295 ntBASIC19.35■□□□□ 0.69
CDX1P47902 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
CDX1P47902 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CDX1P47902 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CDX1P47902 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDX1P47902 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDX1P47902 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDX1P47902 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CDX1P47902 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CDX1P47902 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CDX1P47902 AL359258.2-201ENST00000564063 1566 ntBASIC19.33■□□□□ 0.69
CDX1P47902 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CDX1P47902 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CDX1P47902 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CDX1P47902 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDX1P47902 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDX1P47902 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC19.32■□□□□ 0.68
CDX1P47902 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDX1P47902 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CDX1P47902 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDX1P47902 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.31■□□□□ 0.68
CDX1P47902 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC19.31■□□□□ 0.68
CDX1P47902 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDX1P47902 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDX1P47902 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC19.31■□□□□ 0.68
CDX1P47902 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC19.31■□□□□ 0.68
CDX1P47902 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDX1P47902 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDX1P47902 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.31■□□□□ 0.68
CDX1P47902 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX1P47902 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX1P47902 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC19.3■□□□□ 0.68
CDX1P47902 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CDX1P47902 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX1P47902 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CDX1P47902 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CDX1P47902 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CDX1P47902 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.29■□□□□ 0.68
CDX1P47902 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.29■□□□□ 0.68
CDX1P47902 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC19.29■□□□□ 0.68
CDX1P47902 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
CDX1P47902 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
CDX1P47902 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX1P47902 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX1P47902 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CDX1P47902 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX1P47902 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX1P47902 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CDX1P47902 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDX1P47902 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDX1P47902 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDX1P47902 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC19.27■□□□□ 0.68
CDX1P47902 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.27■□□□□ 0.68
CDX1P47902 AL157400.5-201ENST00000507624 621 ntBASIC19.27■□□□□ 0.68
CDX1P47902 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDX1P47902 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.27■□□□□ 0.68
CDX1P47902 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.26■□□□□ 0.67
CDX1P47902 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDX1P47902 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDX1P47902 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDX1P47902 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDX1P47902 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDX1P47902 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.25■□□□□ 0.67
CDX1P47902 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX1P47902 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX1P47902 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX1P47902 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDX1P47902 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX1P47902 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX1P47902 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX1P47902 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CDX1P47902 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX1P47902 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms