Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC32.3■■■□□ 2.76
CSB-PGBD3P0DP91 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC32.3■■■□□ 2.76
CSB-PGBD3P0DP91 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC32.29■■■□□ 2.76
CSB-PGBD3P0DP91 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC32.29■■■□□ 2.76
CSB-PGBD3P0DP91 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC32.29■■■□□ 2.76
CSB-PGBD3P0DP91 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC32.29■■■□□ 2.76
CSB-PGBD3P0DP91 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CSB-PGBD3P0DP91 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC32.28■■■□□ 2.76
CSB-PGBD3P0DP91 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC32.28■■■□□ 2.76
CSB-PGBD3P0DP91 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC32.28■■■□□ 2.76
CSB-PGBD3P0DP91 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC32.28■■■□□ 2.76
CSB-PGBD3P0DP91 AC120024.1-201ENST00000562672 995 ntBASIC32.27■■■□□ 2.76
CSB-PGBD3P0DP91 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC32.27■■■□□ 2.76
CSB-PGBD3P0DP91 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CSB-PGBD3P0DP91 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CSB-PGBD3P0DP91 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
CSB-PGBD3P0DP91 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC32.26■■■□□ 2.76
CSB-PGBD3P0DP91 AC137630.3-201ENST00000607245 391 ntBASIC32.26■■■□□ 2.75
CSB-PGBD3P0DP91 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC32.25■■■□□ 2.75
CSB-PGBD3P0DP91 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
CSB-PGBD3P0DP91 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC32.25■■■□□ 2.75
CSB-PGBD3P0DP91 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC32.25■■■□□ 2.75
CSB-PGBD3P0DP91 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
CSB-PGBD3P0DP91 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
CSB-PGBD3P0DP91 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
CSB-PGBD3P0DP91 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
CSB-PGBD3P0DP91 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC32.23■■■□□ 2.75
CSB-PGBD3P0DP91 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC32.23■■■□□ 2.75
CSB-PGBD3P0DP91 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC32.23■■■□□ 2.75
CSB-PGBD3P0DP91 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC32.23■■■□□ 2.75
CSB-PGBD3P0DP91 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
CSB-PGBD3P0DP91 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
CSB-PGBD3P0DP91 AC021242.3-201ENST00000607598 1377 ntBASIC32.22■■■□□ 2.75
CSB-PGBD3P0DP91 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC32.22■■■□□ 2.75
CSB-PGBD3P0DP91 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC32.22■■■□□ 2.75
CSB-PGBD3P0DP91 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC32.22■■■□□ 2.75
CSB-PGBD3P0DP91 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC32.21■■■□□ 2.75
CSB-PGBD3P0DP91 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
CSB-PGBD3P0DP91 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
CSB-PGBD3P0DP91 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
CSB-PGBD3P0DP91 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
CSB-PGBD3P0DP91 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC32.2■■■□□ 2.75
CSB-PGBD3P0DP91 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC32.2■■■□□ 2.75
CSB-PGBD3P0DP91 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC32.2■■■□□ 2.75
CSB-PGBD3P0DP91 TRIR-202ENST00000588213 841 ntTSL 3 BASIC32.2■■■□□ 2.75
CSB-PGBD3P0DP91 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC32.19■■■□□ 2.74
CSB-PGBD3P0DP91 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CSB-PGBD3P0DP91 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC32.19■■■□□ 2.74
CSB-PGBD3P0DP91 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC32.18■■■□□ 2.74
CSB-PGBD3P0DP91 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CSB-PGBD3P0DP91 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CSB-PGBD3P0DP91 MIR638-201ENST00000385237 100 ntBASIC32.18■■■□□ 2.74
CSB-PGBD3P0DP91 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CSB-PGBD3P0DP91 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC32.18■■■□□ 2.74
CSB-PGBD3P0DP91 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CSB-PGBD3P0DP91 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CSB-PGBD3P0DP91 ST7-205ENST00000393446 2114 ntTSL 5 BASIC32.17■■■□□ 2.74
CSB-PGBD3P0DP91 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC32.16■■■□□ 2.74
CSB-PGBD3P0DP91 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC32.16■■■□□ 2.74
CSB-PGBD3P0DP91 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
CSB-PGBD3P0DP91 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
CSB-PGBD3P0DP91 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC32.15■■■□□ 2.74
CSB-PGBD3P0DP91 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC32.15■■■□□ 2.74
CSB-PGBD3P0DP91 DRD5P2-201ENST00000421395 2012 ntBASIC32.15■■■□□ 2.74
CSB-PGBD3P0DP91 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC32.15■■■□□ 2.74
CSB-PGBD3P0DP91 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC32.14■■■□□ 2.74
CSB-PGBD3P0DP91 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC32.14■■■□□ 2.74
CSB-PGBD3P0DP91 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CSB-PGBD3P0DP91 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC32.14■■■□□ 2.74
CSB-PGBD3P0DP91 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC32.14■■■□□ 2.74
CSB-PGBD3P0DP91 AC092028.1-203ENST00000608262 953 ntBASIC32.14■■■□□ 2.74
CSB-PGBD3P0DP91 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC32.13■■■□□ 2.73
CSB-PGBD3P0DP91 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC32.13■■■□□ 2.73
CSB-PGBD3P0DP91 BX255925.1-201ENST00000566954 1854 ntBASIC32.13■■■□□ 2.73
CSB-PGBD3P0DP91 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC32.13■■■□□ 2.73
CSB-PGBD3P0DP91 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC32.12■■■□□ 2.73
CSB-PGBD3P0DP91 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
CSB-PGBD3P0DP91 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CSB-PGBD3P0DP91 NALT1-201ENST00000429224 738 ntTSL 5 BASIC32.12■■■□□ 2.73
CSB-PGBD3P0DP91 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC32.12■■■□□ 2.73
CSB-PGBD3P0DP91 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CSB-PGBD3P0DP91 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC32.11■■■□□ 2.73
CSB-PGBD3P0DP91 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC32.11■■■□□ 2.73
CSB-PGBD3P0DP91 SRR-208ENST00000576848 588 ntTSL 4 BASIC32.11■■■□□ 2.73
CSB-PGBD3P0DP91 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC32.11■■■□□ 2.73
CSB-PGBD3P0DP91 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC32.11■■■□□ 2.73
CSB-PGBD3P0DP91 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC32.1■■■□□ 2.73
CSB-PGBD3P0DP91 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
CSB-PGBD3P0DP91 AC131281.2-201ENST00000520478 145 ntBASIC32.1■■■□□ 2.73
CSB-PGBD3P0DP91 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC32.1■■■□□ 2.73
CSB-PGBD3P0DP91 AL139246.5-201ENST00000606645 996 ntBASIC32.1■■■□□ 2.73
CSB-PGBD3P0DP91 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
CSB-PGBD3P0DP91 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC32.1■■■□□ 2.73
CSB-PGBD3P0DP91 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
CSB-PGBD3P0DP91 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
CSB-PGBD3P0DP91 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC32.09■■■□□ 2.73
CSB-PGBD3P0DP91 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC32.09■■■□□ 2.73
CSB-PGBD3P0DP91 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC32.09■■■□□ 2.73
CSB-PGBD3P0DP91 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC32.09■■■□□ 2.73
CSB-PGBD3P0DP91 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC32.09■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms