Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV1-1A0A0B4J248 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TRAV1-1A0A0B4J248 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRAV1-1A0A0B4J248 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.61
TRAV1-1A0A0B4J248 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.83■□□□□ 0.61
TRAV1-1A0A0B4J248 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
TRAV1-1A0A0B4J248 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV1-1A0A0B4J248 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV1-1A0A0B4J248 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV1-1A0A0B4J248 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV1-1A0A0B4J248 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRAV1-1A0A0B4J248 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV1-1A0A0B4J248 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
TRAV1-1A0A0B4J248 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
TRAV1-1A0A0B4J248 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
TRAV1-1A0A0B4J248 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV1-1A0A0B4J248 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRAV1-1A0A0B4J248 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
TRAV1-1A0A0B4J248 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
TRAV1-1A0A0B4J248 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV1-1A0A0B4J248 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV1-1A0A0B4J248 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TRAV1-1A0A0B4J248 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.81■□□□□ 0.6
TRAV1-1A0A0B4J248 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV1-1A0A0B4J248 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV1-1A0A0B4J248 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-1A0A0B4J248 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC18.8■□□□□ 0.6
TRAV1-1A0A0B4J248 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-1A0A0B4J248 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
TRAV1-1A0A0B4J248 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-1A0A0B4J248 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-1A0A0B4J248 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-1A0A0B4J248 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-1A0A0B4J248 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
TRAV1-1A0A0B4J248 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-1A0A0B4J248 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
TRAV1-1A0A0B4J248 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV1-1A0A0B4J248 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-1A0A0B4J248 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-1A0A0B4J248 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-1A0A0B4J248 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-1A0A0B4J248 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC18.79■□□□□ 0.6
TRAV1-1A0A0B4J248 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-1A0A0B4J248 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV1-1A0A0B4J248 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC18.79■□□□□ 0.6
TRAV1-1A0A0B4J248 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TRAV1-1A0A0B4J248 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.78■□□□□ 0.6
TRAV1-1A0A0B4J248 EI24-212ENST00000615917 1407 ntTSL 2 BASIC18.78■□□□□ 0.6
TRAV1-1A0A0B4J248 EBPL-202ENST00000378268 680 ntTSL 3 BASIC18.78■□□□□ 0.6
TRAV1-1A0A0B4J248 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
TRAV1-1A0A0B4J248 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV1-1A0A0B4J248 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV1-1A0A0B4J248 ME2-208ENST00000638937 2471 ntTSL 5 BASIC18.77■□□□□ 0.6
TRAV1-1A0A0B4J248 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.77■□□□□ 0.6
TRAV1-1A0A0B4J248 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV1-1A0A0B4J248 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-1A0A0B4J248 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC18.76■□□□□ 0.59
TRAV1-1A0A0B4J248 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAV1-1A0A0B4J248 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-1A0A0B4J248 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-1A0A0B4J248 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-1A0A0B4J248 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-1A0A0B4J248 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAV1-1A0A0B4J248 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-1A0A0B4J248 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-1A0A0B4J248 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV1-1A0A0B4J248 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV1-1A0A0B4J248 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV1-1A0A0B4J248 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC18.75■□□□□ 0.59
TRAV1-1A0A0B4J248 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
TRAV1-1A0A0B4J248 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV1-1A0A0B4J248 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC18.74■□□□□ 0.59
TRAV1-1A0A0B4J248 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TRAV1-1A0A0B4J248 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAV1-1A0A0B4J248 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAV1-1A0A0B4J248 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TRAV1-1A0A0B4J248 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.74■□□□□ 0.59
TRAV1-1A0A0B4J248 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAV1-1A0A0B4J248 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV1-1A0A0B4J248 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV1-1A0A0B4J248 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV1-1A0A0B4J248 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV1-1A0A0B4J248 AL117328.2-201ENST00000624617 1940 ntBASIC18.73■□□□□ 0.59
TRAV1-1A0A0B4J248 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC18.73■□□□□ 0.59
TRAV1-1A0A0B4J248 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAV1-1A0A0B4J248 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.73■□□□□ 0.59
TRAV1-1A0A0B4J248 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV1-1A0A0B4J248 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV1-1A0A0B4J248 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV1-1A0A0B4J248 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV1-1A0A0B4J248 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC18.72■□□□□ 0.59
TRAV1-1A0A0B4J248 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC18.72■□□□□ 0.59
TRAV1-1A0A0B4J248 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC18.72■□□□□ 0.59
TRAV1-1A0A0B4J248 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV1-1A0A0B4J248 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
TRAV1-1A0A0B4J248 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV1-1A0A0B4J248 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV1-1A0A0B4J248 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
TRAV1-1A0A0B4J248 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV1-1A0A0B4J248 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms