Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.25■□□□□ 0.35
USP39Q53GS9 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.25■□□□□ 0.35
USP39Q53GS9 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
USP39Q53GS9 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
USP39Q53GS9 AC244107.1-201ENST00000442033 332 ntBASIC17.25■□□□□ 0.35
USP39Q53GS9 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.25■□□□□ 0.35
USP39Q53GS9 TIMM8BP1-201ENST00000452384 211 ntBASIC17.25■□□□□ 0.35
USP39Q53GS9 AC067863.1-201ENST00000494933 530 ntBASIC17.25■□□□□ 0.35
USP39Q53GS9 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
USP39Q53GS9 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.25■□□□□ 0.35
USP39Q53GS9 RNA5SP421-201ENST00000516864 134 ntBASIC17.25■□□□□ 0.35
USP39Q53GS9 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.25■□□□□ 0.35
USP39Q53GS9 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.25■□□□□ 0.35
USP39Q53GS9 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
USP39Q53GS9 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.25■□□□□ 0.35
USP39Q53GS9 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.25■□□□□ 0.35
USP39Q53GS9 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.25■□□□□ 0.35
USP39Q53GS9 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
USP39Q53GS9 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
USP39Q53GS9 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
USP39Q53GS9 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
USP39Q53GS9 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
USP39Q53GS9 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP39Q53GS9 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.24■□□□□ 0.35
USP39Q53GS9 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
USP39Q53GS9 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
USP39Q53GS9 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP39Q53GS9 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.24■□□□□ 0.35
USP39Q53GS9 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP39Q53GS9 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP39Q53GS9 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP39Q53GS9 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
USP39Q53GS9 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.24■□□□□ 0.35
USP39Q53GS9 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP39Q53GS9 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.24■□□□□ 0.35
USP39Q53GS9 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.24■□□□□ 0.35
USP39Q53GS9 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.24■□□□□ 0.35
USP39Q53GS9 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.24■□□□□ 0.35
USP39Q53GS9 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.24■□□□□ 0.35
USP39Q53GS9 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP39Q53GS9 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP39Q53GS9 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP39Q53GS9 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP39Q53GS9 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP39Q53GS9 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP39Q53GS9 AC092919.2-201ENST00000623631 1645 ntBASIC17.24■□□□□ 0.35
USP39Q53GS9 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.24■□□□□ 0.35
USP39Q53GS9 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP39Q53GS9 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP39Q53GS9 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP39Q53GS9 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP39Q53GS9 AC129492.6-201ENST00000611383 1305 ntBASIC17.23■□□□□ 0.35
USP39Q53GS9 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP39Q53GS9 NFIC-211ENST00000641145 8399 ntBASIC17.23■□□□□ 0.35
USP39Q53GS9 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP39Q53GS9 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP39Q53GS9 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
USP39Q53GS9 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP39Q53GS9 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP39Q53GS9 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP39Q53GS9 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.23■□□□□ 0.35
USP39Q53GS9 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.23■□□□□ 0.35
USP39Q53GS9 MIR4745-201ENST00000577608 62 ntBASIC17.23■□□□□ 0.35
USP39Q53GS9 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.23■□□□□ 0.35
USP39Q53GS9 AC005498.2-205ENST00000593218 784 ntBASIC17.23■□□□□ 0.35
USP39Q53GS9 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.23■□□□□ 0.35
USP39Q53GS9 AC026120.1-201ENST00000611536 926 ntBASIC17.23■□□□□ 0.35
USP39Q53GS9 ACTL9-202ENST00000612068 1252 ntBASIC17.23■□□□□ 0.35
USP39Q53GS9 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.23■□□□□ 0.35
USP39Q53GS9 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.23■□□□□ 0.35
USP39Q53GS9 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.23■□□□□ 0.35
USP39Q53GS9 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
USP39Q53GS9 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP39Q53GS9 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP39Q53GS9 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.23■□□□□ 0.35
USP39Q53GS9 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP39Q53GS9 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.23■□□□□ 0.35
USP39Q53GS9 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
USP39Q53GS9 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms