Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CL1P78423 IRF8-202ENST00000562492 946 ntTSL 3 BASIC13.73□□□□□ -0.21
CX3CL1P78423 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC13.73□□□□□ -0.21
CX3CL1P78423 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
CX3CL1P78423 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC13.73□□□□□ -0.21
CX3CL1P78423 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC13.73□□□□□ -0.21
CX3CL1P78423 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CL1P78423 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC13.73□□□□□ -0.21
CX3CL1P78423 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CL1P78423 AL022326.1-202ENST00000641533 845 ntBASIC13.73□□□□□ -0.21
CX3CL1P78423 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC13.73□□□□□ -0.21
CX3CL1P78423 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CL1P78423 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CL1P78423 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CL1P78423 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC13.73□□□□□ -0.21
CX3CL1P78423 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
CX3CL1P78423 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CL1P78423 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC13.73□□□□□ -0.21
CX3CL1P78423 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CL1P78423 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CL1P78423 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.73□□□□□ -0.21
CX3CL1P78423 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CL1P78423 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CX3CL1P78423 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC13.72□□□□□ -0.21
CX3CL1P78423 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CX3CL1P78423 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CX3CL1P78423 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC13.72□□□□□ -0.21
CX3CL1P78423 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC13.72□□□□□ -0.21
CX3CL1P78423 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CX3CL1P78423 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC13.72□□□□□ -0.21
CX3CL1P78423 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CX3CL1P78423 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CX3CL1P78423 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC13.72□□□□□ -0.21
CX3CL1P78423 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CX3CL1P78423 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC13.72□□□□□ -0.21
CX3CL1P78423 FGFR3P6-201ENST00000457012 610 ntBASIC13.72□□□□□ -0.21
CX3CL1P78423 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC13.72□□□□□ -0.21
CX3CL1P78423 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC13.72□□□□□ -0.21
CX3CL1P78423 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CX3CL1P78423 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
CX3CL1P78423 CYB561-217ENST00000582997 877 ntTSL 5 BASIC13.72□□□□□ -0.21
CX3CL1P78423 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC13.72□□□□□ -0.21
CX3CL1P78423 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC13.72□□□□□ -0.21
CX3CL1P78423 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CX3CL1P78423 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CX3CL1P78423 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CX3CL1P78423 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CX3CL1P78423 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC13.72□□□□□ -0.21
CX3CL1P78423 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC13.72□□□□□ -0.21
CX3CL1P78423 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CX3CL1P78423 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CX3CL1P78423 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CX3CL1P78423 PCDHA14-201ENST00000506751 2298 ntBASIC13.71□□□□□ -0.21
CX3CL1P78423 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC13.71□□□□□ -0.21
CX3CL1P78423 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC13.71□□□□□ -0.21
CX3CL1P78423 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC13.71□□□□□ -0.21
CX3CL1P78423 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC13.71□□□□□ -0.21
CX3CL1P78423 AL596257.1-201ENST00000641463 2694 ntBASIC13.71□□□□□ -0.21
CX3CL1P78423 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
CX3CL1P78423 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC13.71□□□□□ -0.21
CX3CL1P78423 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC13.71□□□□□ -0.21
CX3CL1P78423 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC13.71□□□□□ -0.21
CX3CL1P78423 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CX3CL1P78423 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC13.71□□□□□ -0.21
CX3CL1P78423 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
CX3CL1P78423 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 SCARNA2-201ENST00000458748 420 ntBASIC13.71□□□□□ -0.21
CX3CL1P78423 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC13.71□□□□□ -0.21
CX3CL1P78423 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC13.71□□□□□ -0.21
CX3CL1P78423 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CX3CL1P78423 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CX3CL1P78423 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CX3CL1P78423 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CX3CL1P78423 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CX3CL1P78423 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CX3CL1P78423 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
CX3CL1P78423 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CX3CL1P78423 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC13.71□□□□□ -0.22
CX3CL1P78423 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CX3CL1P78423 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
CX3CL1P78423 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CX3CL1P78423 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CX3CL1P78423 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC13.71□□□□□ -0.22
CX3CL1P78423 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CX3CL1P78423 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC13.71□□□□□ -0.22
CX3CL1P78423 MST1L-201ENST00000442552 2185 ntBASIC13.71□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms