Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC188H7C350 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC188H7C350 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC188H7C350 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC188H7C350 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC188H7C350 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC188H7C350 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
CCDC188H7C350 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CCDC188H7C350 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
CCDC188H7C350 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.68■□□□□ 0.42
CCDC188H7C350 AC246785.2-201ENST00000432512 513 ntBASIC17.68■□□□□ 0.42
CCDC188H7C350 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC188H7C350 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC188H7C350 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.68■□□□□ 0.42
CCDC188H7C350 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CCDC188H7C350 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC188H7C350 AC073508.3-201ENST00000619697 1419 ntBASIC17.68■□□□□ 0.42
CCDC188H7C350 AL139011.1-202ENST00000642063 584 ntBASIC17.68■□□□□ 0.42
CCDC188H7C350 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC188H7C350 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC188H7C350 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC188H7C350 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.68■□□□□ 0.42
CCDC188H7C350 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC188H7C350 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC188H7C350 AC024909.3-201ENST00000611513 2257 ntBASIC17.68■□□□□ 0.42
CCDC188H7C350 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC188H7C350 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC188H7C350 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CCDC188H7C350 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CCDC188H7C350 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 AL596257.1-201ENST00000641463 2694 ntBASIC17.67■□□□□ 0.42
CCDC188H7C350 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC188H7C350 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CCDC188H7C350 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC188H7C350 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CCDC188H7C350 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC188H7C350 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC188H7C350 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CCDC188H7C350 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC188H7C350 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC188H7C350 TSPY22P-201ENST00000427496 604 ntBASIC17.67■□□□□ 0.42
CCDC188H7C350 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC188H7C350 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC188H7C350 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC188H7C350 AC011467.2-201ENST00000598425 242 ntBASIC17.67■□□□□ 0.42
CCDC188H7C350 AC005363.2-201ENST00000618631 242 ntBASIC17.67■□□□□ 0.42
CCDC188H7C350 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CCDC188H7C350 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC188H7C350 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC188H7C350 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC188H7C350 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC188H7C350 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC188H7C350 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC188H7C350 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC188H7C350 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC188H7C350 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
CCDC188H7C350 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC188H7C350 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
CCDC188H7C350 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC188H7C350 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC188H7C350 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC188H7C350 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC188H7C350 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC188H7C350 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.66■□□□□ 0.42
CCDC188H7C350 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC188H7C350 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC188H7C350 IGHV3-41-201ENST00000613121 348 ntBASIC17.66■□□□□ 0.42
CCDC188H7C350 AC083849.1-201ENST00000615227 514 ntBASIC17.66■□□□□ 0.42
CCDC188H7C350 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.66■□□□□ 0.42
CCDC188H7C350 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC188H7C350 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC188H7C350 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC188H7C350 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC188H7C350 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC188H7C350 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CCDC188H7C350 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC188H7C350 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC188H7C350 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC188H7C350 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms