Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4S1Q9Y587 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
AP4S1Q9Y587 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4S1Q9Y587 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
AP4S1Q9Y587 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
AP4S1Q9Y587 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.11■□□□□ 0.17
AP4S1Q9Y587 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 RPS2P55-201ENST00000397318 883 ntBASIC16.11■□□□□ 0.17
AP4S1Q9Y587 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 AC113410.3-201ENST00000623366 203 ntBASIC16.11■□□□□ 0.17
AP4S1Q9Y587 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
AP4S1Q9Y587 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 MTCL1P1-201ENST00000446207 792 ntBASIC16.1■□□□□ 0.17
AP4S1Q9Y587 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 AP001412.1-201ENST00000608405 714 ntBASIC16.1■□□□□ 0.17
AP4S1Q9Y587 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 AC097374.2-201ENST00000618617 1306 ntBASIC16.1■□□□□ 0.17
AP4S1Q9Y587 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
AP4S1Q9Y587 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
AP4S1Q9Y587 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms