Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 WARS-232ENST00000556645 2508 ntTSL 5 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 LINC00552-201ENST00000625151 2579 ntBASIC10.57□□□□□ -0.72
LINC00643Q86TS7 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 AL356585.2-201ENST00000625078 2396 ntBASIC10.57□□□□□ -0.72
LINC00643Q86TS7 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 DUX4L2-201ENST00000561772 1275 ntBASIC10.57□□□□□ -0.72
LINC00643Q86TS7 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 AC011298.3-201ENST00000615796 283 ntBASIC10.57□□□□□ -0.72
LINC00643Q86TS7 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 DUX4L6-201ENST00000626483 1275 ntBASIC10.57□□□□□ -0.72
LINC00643Q86TS7 DUX4L1-201ENST00000627662 1275 ntBASIC10.57□□□□□ -0.72
LINC00643Q86TS7 DUX4L8-201ENST00000629013 1275 ntBASIC10.57□□□□□ -0.72
LINC00643Q86TS7 DUX4L3-201ENST00000630187 1275 ntBASIC10.57□□□□□ -0.72
LINC00643Q86TS7 DUX4L7-201ENST00000630678 1275 ntBASIC10.57□□□□□ -0.72
LINC00643Q86TS7 DUX4L5-201ENST00000630834 1275 ntBASIC10.57□□□□□ -0.72
LINC00643Q86TS7 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 KRT8P3-201ENST00000519669 1449 ntBASIC10.57□□□□□ -0.72
LINC00643Q86TS7 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 AC022898.2-201ENST00000616822 1312 ntBASIC10.57□□□□□ -0.72
LINC00643Q86TS7 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC10.57□□□□□ -0.72
LINC00643Q86TS7 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 SSR4P1-203ENST00000599569 2260 ntBASIC10.56□□□□□ -0.72
LINC00643Q86TS7 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 KRT18P60-201ENST00000312876 1297 ntBASIC10.56□□□□□ -0.72
LINC00643Q86TS7 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 AC103724.3-201ENST00000564481 992 ntBASIC10.56□□□□□ -0.72
LINC00643Q86TS7 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 AC105020.6-201ENST00000621523 1217 ntBASIC10.56□□□□□ -0.72
LINC00643Q86TS7 APP-205ENST00000358918 2366 ntTSL 5 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
LINC00643Q86TS7 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms