Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 AC009118.2-201ENST00000613275 655 ntBASIC19.21■□□□□ 0.67
CCNA1P78396 AC093525.9-201ENST00000624961 1746 ntBASIC19.21■□□□□ 0.67
CCNA1P78396 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCNA1P78396 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCNA1P78396 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCNA1P78396 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CCNA1P78396 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.21■□□□□ 0.67
CCNA1P78396 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CCNA1P78396 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC19.2■□□□□ 0.66
CCNA1P78396 CRB3P1-201ENST00000449338 276 ntBASIC19.2■□□□□ 0.66
CCNA1P78396 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.2■□□□□ 0.66
CCNA1P78396 AC004890.2-204ENST00000481968 304 ntBASIC19.2■□□□□ 0.66
CCNA1P78396 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC19.2■□□□□ 0.66
CCNA1P78396 RARRES2P9-201ENST00000565168 469 ntBASIC19.2■□□□□ 0.66
CCNA1P78396 AL138918.1-201ENST00000568306 659 ntBASIC19.2■□□□□ 0.66
CCNA1P78396 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.2■□□□□ 0.66
CCNA1P78396 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.2■□□□□ 0.66
CCNA1P78396 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.2■□□□□ 0.66
CCNA1P78396 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CCNA1P78396 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CCNA1P78396 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCNA1P78396 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.19■□□□□ 0.66
CCNA1P78396 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 AC142381.1-201ENST00000426099 345 ntBASIC19.19■□□□□ 0.66
CCNA1P78396 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC19.19■□□□□ 0.66
CCNA1P78396 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC19.19■□□□□ 0.66
CCNA1P78396 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC19.19■□□□□ 0.66
CCNA1P78396 CYP2A7P1-201ENST00000595391 815 ntBASIC19.19■□□□□ 0.66
CCNA1P78396 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CCNA1P78396 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.19■□□□□ 0.66
CCNA1P78396 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCNA1P78396 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
CCNA1P78396 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CCNA1P78396 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
CCNA1P78396 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNA1P78396 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.18■□□□□ 0.66
CCNA1P78396 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCNA1P78396 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.18■□□□□ 0.66
CCNA1P78396 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNA1P78396 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNA1P78396 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCNA1P78396 GK-202ENST00000378941 458 ntTSL 3 BASIC19.18■□□□□ 0.66
CCNA1P78396 PP14571-201ENST00000404327 934 ntTSL 2 BASIC19.18■□□□□ 0.66
CCNA1P78396 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC19.18■□□□□ 0.66
CCNA1P78396 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC19.18■□□□□ 0.66
CCNA1P78396 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC19.18■□□□□ 0.66
CCNA1P78396 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC19.18■□□□□ 0.66
CCNA1P78396 AC003101.2-201ENST00000612557 442 ntBASIC19.18■□□□□ 0.66
CCNA1P78396 AL590560.3-201ENST00000623350 461 ntBASIC19.18■□□□□ 0.66
CCNA1P78396 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNA1P78396 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNA1P78396 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.18■□□□□ 0.66
CCNA1P78396 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCNA1P78396 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCNA1P78396 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.18■□□□□ 0.66
CCNA1P78396 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.17■□□□□ 0.66
CCNA1P78396 AC100757.3-201ENST00000622361 1406 ntBASIC19.17■□□□□ 0.66
CCNA1P78396 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
CCNA1P78396 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
CCNA1P78396 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCNA1P78396 PIN1P1-201ENST00000412108 996 ntBASIC19.17■□□□□ 0.66
CCNA1P78396 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms