Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.61■□□□□ 0.73
LIG1P18858 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.61■□□□□ 0.73
LIG1P18858 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.61■□□□□ 0.73
LIG1P18858 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 RN7SL510P-201ENST00000581311 263 ntBASIC19.61■□□□□ 0.73
LIG1P18858 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.61■□□□□ 0.73
LIG1P18858 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.61■□□□□ 0.73
LIG1P18858 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.61■□□□□ 0.73
LIG1P18858 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 AL591684.3-201ENST00000605187 298 ntBASIC19.61■□□□□ 0.73
LIG1P18858 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.61■□□□□ 0.73
LIG1P18858 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.61■□□□□ 0.73
LIG1P18858 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.61■□□□□ 0.73
LIG1P18858 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.61■□□□□ 0.73
LIG1P18858 AC011270.2-201ENST00000624293 2550 ntBASIC19.61■□□□□ 0.73
LIG1P18858 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.61■□□□□ 0.73
LIG1P18858 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.61■□□□□ 0.73
LIG1P18858 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.61■□□□□ 0.73
LIG1P18858 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC19.61■□□□□ 0.73
LIG1P18858 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.61■□□□□ 0.73
LIG1P18858 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.6■□□□□ 0.73
LIG1P18858 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
LIG1P18858 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.6■□□□□ 0.73
LIG1P18858 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.6■□□□□ 0.73
LIG1P18858 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.6■□□□□ 0.73
LIG1P18858 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.6■□□□□ 0.73
LIG1P18858 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.6■□□□□ 0.73
LIG1P18858 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.6■□□□□ 0.73
LIG1P18858 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
LIG1P18858 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
LIG1P18858 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
LIG1P18858 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.6■□□□□ 0.73
LIG1P18858 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
LIG1P18858 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.6■□□□□ 0.73
LIG1P18858 AL162727.3-201ENST00000635661 2787 ntBASIC19.6■□□□□ 0.73
LIG1P18858 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIG1P18858 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG1P18858 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG1P18858 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG1P18858 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG1P18858 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
LIG1P18858 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG1P18858 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG1P18858 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.59■□□□□ 0.73
LIG1P18858 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
LIG1P18858 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.59■□□□□ 0.73
LIG1P18858 EMBP1-201ENST00000458200 901 ntBASIC19.59■□□□□ 0.73
LIG1P18858 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.59■□□□□ 0.73
LIG1P18858 MIR5100-201ENST00000579544 119 ntBASIC19.59■□□□□ 0.73
LIG1P18858 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG1P18858 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.59■□□□□ 0.73
LIG1P18858 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.59■□□□□ 0.73
LIG1P18858 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.59■□□□□ 0.73
LIG1P18858 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG1P18858 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.59■□□□□ 0.73
LIG1P18858 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG1P18858 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG1P18858 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC19.58■□□□□ 0.73
LIG1P18858 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LIG1P18858 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.58■□□□□ 0.73
LIG1P18858 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms