Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DOAP06340 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DOAP06340 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 CROCCP2-202ENST00000412962 2773 ntBASIC19.95■□□□□ 0.78
HLA-DOAP06340 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 WASH6P-202ENST00000359512 1437 ntBASIC19.94■□□□□ 0.78
HLA-DOAP06340 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.94■□□□□ 0.78
HLA-DOAP06340 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
HLA-DOAP06340 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HLA-DOAP06340 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 LINC02012-201ENST00000608206 1725 ntBASIC19.93■□□□□ 0.78
HLA-DOAP06340 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.93■□□□□ 0.78
HLA-DOAP06340 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 SPCS2P4-201ENST00000436160 681 ntBASIC19.93■□□□□ 0.78
HLA-DOAP06340 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 AC069335.1-201ENST00000489972 472 ntBASIC19.93■□□□□ 0.78
HLA-DOAP06340 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
HLA-DOAP06340 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
HLA-DOAP06340 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DOAP06340 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DOAP06340 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DOAP06340 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DOAP06340 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DOAP06340 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DOAP06340 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HLA-DOAP06340 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 FAM86GP-201ENST00000448322 971 ntBASIC19.92■□□□□ 0.78
HLA-DOAP06340 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 AC124947.2-201ENST00000547118 1133 ntBASIC19.92■□□□□ 0.78
HLA-DOAP06340 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC19.92■□□□□ 0.78
HLA-DOAP06340 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms