Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC13.74□□□□□ -0.21
HMGB3O15347 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC13.74□□□□□ -0.21
HMGB3O15347 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC13.74□□□□□ -0.21
HMGB3O15347 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC13.74□□□□□ -0.21
HMGB3O15347 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC13.74□□□□□ -0.21
HMGB3O15347 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 MED29-202ENST00000594368 1471 ntTSL 2 BASIC13.74□□□□□ -0.21
HMGB3O15347 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HMGB3O15347 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC13.73□□□□□ -0.21
HMGB3O15347 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
HMGB3O15347 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
HMGB3O15347 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
HMGB3O15347 LINC02012-201ENST00000608206 1725 ntBASIC13.73□□□□□ -0.21
HMGB3O15347 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
HMGB3O15347 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 AL355802.2-201ENST00000402069 882 ntBASIC13.73□□□□□ -0.21
HMGB3O15347 CRYGFP-201ENST00000418459 633 ntBASIC13.73□□□□□ -0.21
HMGB3O15347 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC13.73□□□□□ -0.21
HMGB3O15347 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC13.73□□□□□ -0.21
HMGB3O15347 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
HMGB3O15347 AC010240.3-201ENST00000607688 395 ntBASIC13.73□□□□□ -0.21
HMGB3O15347 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC13.73□□□□□ -0.21
HMGB3O15347 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
HMGB3O15347 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC13.73□□□□□ -0.21
HMGB3O15347 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.73□□□□□ -0.21
HMGB3O15347 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
HMGB3O15347 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
HMGB3O15347 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
HMGB3O15347 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC13.73□□□□□ -0.21
HMGB3O15347 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC13.73□□□□□ -0.21
HMGB3O15347 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HMGB3O15347 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.72□□□□□ -0.21
HMGB3O15347 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC13.72□□□□□ -0.21
HMGB3O15347 KRT8P47-201ENST00000604727 1398 ntBASIC13.72□□□□□ -0.21
HMGB3O15347 ABCA2-223ENST00000614293 8146 ntTSL 5 BASIC13.72□□□□□ -0.21
HMGB3O15347 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 GFRA1-204ENST00000439649 9216 ntAPPRIS P3 TSL 2 BASIC13.72□□□□□ -0.21
HMGB3O15347 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC13.72□□□□□ -0.21
HMGB3O15347 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
HMGB3O15347 AP003041.3-201ENST00000527151 707 ntBASIC13.72□□□□□ -0.21
HMGB3O15347 C1QBPP2-201ENST00000528754 825 ntBASIC13.72□□□□□ -0.21
HMGB3O15347 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC13.72□□□□□ -0.21
HMGB3O15347 MIR3180-4-201ENST00000582223 153 ntBASIC13.72□□□□□ -0.21
HMGB3O15347 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC13.72□□□□□ -0.21
HMGB3O15347 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC13.72□□□□□ -0.21
HMGB3O15347 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC13.72□□□□□ -0.21
HMGB3O15347 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
HMGB3O15347 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
HMGB3O15347 GLI3-201ENST00000395925 8208 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
HMGB3O15347 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC13.72□□□□□ -0.21
HMGB3O15347 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 132.1 ms