Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.33■□□□□ 0.2
VPS29Q9UBQ0 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
VPS29Q9UBQ0 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
VPS29Q9UBQ0 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS29Q9UBQ0 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS29Q9UBQ0 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 AC243591.1-201ENST00000452967 1364 ntBASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 PRELID1P1-202ENST00000567272 903 ntBASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS29Q9UBQ0 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 UBALD1-205ENST00000590891 2641 ntBASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 TERC-201ENST00000602385 541 ntBASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 AC092171.3-201ENST00000610122 2651 ntBASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS29Q9UBQ0 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS29Q9UBQ0 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms