Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 BX664615.1-201ENST00000443558 458 ntBASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 C8orf49-201ENST00000525043 1968 ntBASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CHMP1AQ9HD42 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 AC026691.1-201ENST00000602502 2017 ntBASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 SNX5-210ENST00000481323 562 ntTSL 3 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 YBX1P2-201ENST00000489612 999 ntBASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 AC133561.5-201ENST00000635547 218 ntBASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CHMP1AQ9HD42 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 AC113347.1-201ENST00000413321 391 ntBASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 AC068472.1-201ENST00000474589 881 ntBASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 AC002558.1-201ENST00000488906 803 ntBASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 IGHV3-52-201ENST00000519770 353 ntBASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 FGF14-AS2-201ENST00000606448 1074 ntBASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.71□□□□□ -0.05
CHMP1AQ9HD42 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms