Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 FAM220CP-201ENST00000395253 831 ntBASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 AC011558.1-201ENST00000623459 338 ntBASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CCDC28BQ9BUN5 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 AL365203.3-201ENST00000609742 2057 ntBASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 SLC25A3P1-201ENST00000443844 931 ntBASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 STK19B-204ENST00000512515 211 ntBASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 AC145285.6-201ENST00000604632 637 ntBASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
CCDC28BQ9BUN5 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC28BQ9BUN5 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC28BQ9BUN5 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC28BQ9BUN5 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC28BQ9BUN5 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC28BQ9BUN5 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC28BQ9BUN5 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC28BQ9BUN5 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CCDC28BQ9BUN5 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.58■□□□□ 0.25
CCDC28BQ9BUN5 AC092364.2-201ENST00000596710 2692 ntBASIC16.58■□□□□ 0.25
CCDC28BQ9BUN5 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
CCDC28BQ9BUN5 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 LINC02228-204ENST00000642115 2962 ntBASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 LIN28AP1-201ENST00000429574 405 ntBASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 RNF126P1-202ENST00000569893 925 ntBASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 AL138831.2-201ENST00000606564 490 ntBASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 AL353801.3-201ENST00000609898 542 ntBASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 Z83836.1-201ENST00000624605 1642 ntBASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CCDC28BQ9BUN5 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC28BQ9BUN5 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms