Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 MIR346-201ENST00000362234 95 ntBASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 LYSMD4-203ENST00000378904 2122 ntBASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 AC241585.1-201ENST00000433527 519 ntBASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 MIR4453-201ENST00000584019 89 ntBASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 AC090164.3-201ENST00000610780 2143 ntBASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 AL358472.5-202ENST00000641448 1267 ntBASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 LETM1P2-201ENST00000597330 2178 ntBASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SNRNP40Q96DI7 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 HCG4-201ENST00000418983 998 ntBASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 AC004890.2-204ENST00000481968 304 ntBASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 SERBP1P5-201ENST00000510079 1181 ntBASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SNRNP40Q96DI7 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 MADD-208ENST00000405573 1823 ntTSL 5 BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SNRNP40Q96DI7 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms