Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RPS2P28-201ENST00000314255 741 ntBASIC5.29□□□□□ -1.56
SYNE1Q8NF91 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC108073.2-201ENST00000464002 357 ntBASIC5.29□□□□□ -1.56
SYNE1Q8NF91 MAL2-202ENST00000531508 892 ntTSL 3 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 FUK-202ENST00000378912 3925 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC004899.2-201ENST00000622993 3860 ntBASIC5.29□□□□□ -1.56
SYNE1Q8NF91 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC022898.2-201ENST00000616822 1312 ntBASIC5.29□□□□□ -1.56
SYNE1Q8NF91 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SYNE1Q8NF91 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 RHOQP3-201ENST00000437982 621 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 BX005266.1-201ENST00000473402 457 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 HCG11-201ENST00000411553 5696 ntBASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 DRAM1-201ENST00000258534 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SYNE1Q8NF91 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms