Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
CLRN1P58418 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.24■□□□□ 0.03
CLRN1P58418 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 NKILA-202ENST00000614771 2598 ntBASIC15.24■□□□□ 0.03
CLRN1P58418 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
CLRN1P58418 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC15.24■□□□□ 0.03
CLRN1P58418 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.24■□□□□ 0.03
CLRN1P58418 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.24■□□□□ 0.03
CLRN1P58418 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
CLRN1P58418 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
CLRN1P58418 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.24■□□□□ 0.03
CLRN1P58418 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CLRN1P58418 IFNL4P1-201ENST00000607083 540 ntBASIC15.24■□□□□ 0.03
CLRN1P58418 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CLRN1P58418 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
CLRN1P58418 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CLRN1P58418 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.23■□□□□ 0.03
CLRN1P58418 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CLRN1P58418 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
CLRN1P58418 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.23■□□□□ 0.03
CLRN1P58418 FGFR3P6-201ENST00000457012 610 ntBASIC15.23■□□□□ 0.03
CLRN1P58418 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CLRN1P58418 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.23■□□□□ 0.03
CLRN1P58418 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC15.23■□□□□ 0.03
CLRN1P58418 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.23■□□□□ 0.03
CLRN1P58418 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.23■□□□□ 0.03
CLRN1P58418 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.23■□□□□ 0.03
CLRN1P58418 AC064862.7-201ENST00000604520 867 ntBASIC15.23■□□□□ 0.03
CLRN1P58418 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CLRN1P58418 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.23■□□□□ 0.03
CLRN1P58418 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
CLRN1P58418 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC15.23■□□□□ 0.03
CLRN1P58418 AC105020.1-201ENST00000435356 2205 ntBASIC15.23■□□□□ 0.03
CLRN1P58418 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CLRN1P58418 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.22■□□□□ 0.03
CLRN1P58418 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CLRN1P58418 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.22■□□□□ 0.03
CLRN1P58418 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.22■□□□□ 0.03
CLRN1P58418 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.22■□□□□ 0.03
CLRN1P58418 SART3-203ENST00000546611 1184 ntBASIC15.22■□□□□ 0.03
CLRN1P58418 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC15.22■□□□□ 0.03
CLRN1P58418 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CLRN1P58418 MTDHP4-201ENST00000600287 670 ntBASIC15.22■□□□□ 0.03
CLRN1P58418 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.22■□□□□ 0.03
CLRN1P58418 AL589182.2-201ENST00000619332 1049 ntBASIC15.22■□□□□ 0.03
CLRN1P58418 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.22■□□□□ 0.03
CLRN1P58418 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
CLRN1P58418 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 AC106886.4-201ENST00000623557 2502 ntBASIC15.22■□□□□ 0.03
CLRN1P58418 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CLRN1P58418 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLRN1P58418 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms