Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
HMGB1P09429 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
HMGB1P09429 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HMGB1P09429 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HMGB1P09429 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HMGB1P09429 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGB1P09429 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 AL391256.1-201ENST00000443260 1855 ntBASIC20.07■□□□□ 0.8
HMGB1P09429 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGB1P09429 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGB1P09429 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGB1P09429 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
HMGB1P09429 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
HMGB1P09429 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGB1P09429 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
HMGB1P09429 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.07■□□□□ 0.8
HMGB1P09429 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
HMGB1P09429 RPS15P9-201ENST00000494093 319 ntBASIC20.07■□□□□ 0.8
HMGB1P09429 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGB1P09429 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
HMGB1P09429 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC20.07■□□□□ 0.8
HMGB1P09429 AC013467.2-201ENST00000605472 835 ntBASIC20.07■□□□□ 0.8
HMGB1P09429 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGB1P09429 PGM5P2-202ENST00000637225 1043 ntBASIC20.07■□□□□ 0.8
HMGB1P09429 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGB1P09429 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGB1P09429 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
HMGB1P09429 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGB1P09429 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGB1P09429 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.07■□□□□ 0.8
HMGB1P09429 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC20.07■□□□□ 0.8
HMGB1P09429 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGB1P09429 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
HMGB1P09429 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
HMGB1P09429 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC20.06■□□□□ 0.8
HMGB1P09429 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
HMGB1P09429 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.06■□□□□ 0.8
HMGB1P09429 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.06■□□□□ 0.8
HMGB1P09429 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.06■□□□□ 0.8
HMGB1P09429 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20.06■□□□□ 0.8
HMGB1P09429 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.06■□□□□ 0.8
HMGB1P09429 KRT126P-201ENST00000549467 1181 ntBASIC20.06■□□□□ 0.8
HMGB1P09429 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.06■□□□□ 0.8
HMGB1P09429 AC105339.3-201ENST00000560043 636 ntBASIC20.06■□□□□ 0.8
HMGB1P09429 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.06■□□□□ 0.8
HMGB1P09429 MIR1199-201ENST00000621445 119 ntBASIC20.06■□□□□ 0.8
HMGB1P09429 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
HMGB1P09429 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 AC002310.6-201ENST00000624451 1377 ntBASIC20.06■□□□□ 0.8
HMGB1P09429 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC20.06■□□□□ 0.8
HMGB1P09429 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HMGB1P09429 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGB1P09429 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGB1P09429 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HMGB1P09429 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HMGB1P09429 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HMGB1P09429 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGB1P09429 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGB1P09429 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGB1P09429 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
HMGB1P09429 AC084018.2-201ENST00000613093 2607 ntBASIC20.05■□□□□ 0.8
HMGB1P09429 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
HMGB1P09429 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGB1P09429 HNRNPDP1-201ENST00000439535 754 ntBASIC20.05■□□□□ 0.8
HMGB1P09429 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.05■□□□□ 0.8
HMGB1P09429 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.05■□□□□ 0.8
HMGB1P09429 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.05■□□□□ 0.8
HMGB1P09429 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGB1P09429 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
HMGB1P09429 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms