Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
UBFD1O14562 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.53■□□□□ 0.24
UBFD1O14562 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.53■□□□□ 0.24
UBFD1O14562 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
UBFD1O14562 KRT18P35-201ENST00000510488 1269 ntBASIC16.53■□□□□ 0.24
UBFD1O14562 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.53■□□□□ 0.24
UBFD1O14562 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.53■□□□□ 0.24
UBFD1O14562 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.53■□□□□ 0.24
UBFD1O14562 MIR5100-201ENST00000579544 119 ntBASIC16.53■□□□□ 0.24
UBFD1O14562 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.53■□□□□ 0.24
UBFD1O14562 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
UBFD1O14562 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
UBFD1O14562 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
UBFD1O14562 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
UBFD1O14562 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
UBFD1O14562 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
UBFD1O14562 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
UBFD1O14562 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
UBFD1O14562 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
UBFD1O14562 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
UBFD1O14562 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
UBFD1O14562 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
UBFD1O14562 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.53■□□□□ 0.24
UBFD1O14562 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
UBFD1O14562 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
UBFD1O14562 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.53■□□□□ 0.24
UBFD1O14562 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.53■□□□□ 0.24
UBFD1O14562 AC005052.1-201ENST00000625181 2492 ntBASIC16.53■□□□□ 0.24
UBFD1O14562 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
UBFD1O14562 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
UBFD1O14562 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
UBFD1O14562 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.52■□□□□ 0.24
UBFD1O14562 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
UBFD1O14562 LINC00895-201ENST00000629028 1637 ntBASIC16.52■□□□□ 0.24
UBFD1O14562 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.52■□□□□ 0.24
UBFD1O14562 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.52■□□□□ 0.24
UBFD1O14562 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.52■□□□□ 0.24
UBFD1O14562 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.52■□□□□ 0.24
UBFD1O14562 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
UBFD1O14562 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.52■□□□□ 0.24
UBFD1O14562 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.52■□□□□ 0.24
UBFD1O14562 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.52■□□□□ 0.24
UBFD1O14562 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
UBFD1O14562 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.52■□□□□ 0.24
UBFD1O14562 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
UBFD1O14562 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.52■□□□□ 0.24
UBFD1O14562 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.52■□□□□ 0.24
UBFD1O14562 AC104819.1-201ENST00000504587 486 ntBASIC16.52■□□□□ 0.24
UBFD1O14562 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.52■□□□□ 0.24
UBFD1O14562 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.52■□□□□ 0.24
UBFD1O14562 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.52■□□□□ 0.24
UBFD1O14562 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
UBFD1O14562 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
UBFD1O14562 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
UBFD1O14562 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
UBFD1O14562 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.52■□□□□ 0.23
UBFD1O14562 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
UBFD1O14562 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.52■□□□□ 0.23
UBFD1O14562 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
UBFD1O14562 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
UBFD1O14562 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
UBFD1O14562 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
UBFD1O14562 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
UBFD1O14562 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
UBFD1O14562 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
UBFD1O14562 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
UBFD1O14562 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.52■□□□□ 0.23
UBFD1O14562 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
UBFD1O14562 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.51■□□□□ 0.23
UBFD1O14562 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.51■□□□□ 0.23
UBFD1O14562 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.51■□□□□ 0.23
UBFD1O14562 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
UBFD1O14562 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
UBFD1O14562 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.51■□□□□ 0.23
UBFD1O14562 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.51■□□□□ 0.23
UBFD1O14562 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
UBFD1O14562 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
UBFD1O14562 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
UBFD1O14562 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms