Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC32.11■■■□□ 2.73
SHROOM4Q9ULL8 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC32.11■■■□□ 2.73
SHROOM4Q9ULL8 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC32.11■■■□□ 2.73
SHROOM4Q9ULL8 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC32.11■■■□□ 2.73
SHROOM4Q9ULL8 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC32.11■■■□□ 2.73
SHROOM4Q9ULL8 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
SHROOM4Q9ULL8 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC32.11■■■□□ 2.73
SHROOM4Q9ULL8 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
SHROOM4Q9ULL8 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
SHROOM4Q9ULL8 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
SHROOM4Q9ULL8 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC32.11■■■□□ 2.73
SHROOM4Q9ULL8 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
SHROOM4Q9ULL8 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 AC067852.2-201ENST00000590513 2313 ntBASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 AC100757.3-201ENST00000622361 1406 ntBASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 MMP17-203ENST00000535004 719 ntTSL 3 BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC32.1■■■□□ 2.73
SHROOM4Q9ULL8 AC020763.4-201ENST00000623414 4170 ntBASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 AC079776.1-201ENST00000401540 1152 ntBASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC32.09■■■□□ 2.73
SHROOM4Q9ULL8 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 TMPRSS11CP-201ENST00000453277 683 ntBASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 IFT20-216ENST00000588477 774 ntTSL 5 BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 AC022144.1-201ENST00000602255 1580 ntBASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC32.08■■■□□ 2.73
SHROOM4Q9ULL8 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC32.07■■■□□ 2.73
SHROOM4Q9ULL8 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 GNE-204ENST00000539208 2190 ntTSL 2 BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 SLC25A6P5-201ENST00000435663 894 ntBASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 SSH2-211ENST00000590153 570 ntTSL 4 BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC32.07■■■□□ 2.72
SHROOM4Q9ULL8 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
SHROOM4Q9ULL8 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC32.06■■■□□ 2.72
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms