Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.36■□□□□ 0.53
LRCH3Q96II8 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.36■□□□□ 0.53
LRCH3Q96II8 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LRCH3Q96II8 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.36■□□□□ 0.53
LRCH3Q96II8 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.36■□□□□ 0.53
LRCH3Q96II8 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.36■□□□□ 0.53
LRCH3Q96II8 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC18.36■□□□□ 0.53
LRCH3Q96II8 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18.36■□□□□ 0.53
LRCH3Q96II8 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.36■□□□□ 0.53
LRCH3Q96II8 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 AC244093.1-201ENST00000610837 814 ntBASIC18.36■□□□□ 0.53
LRCH3Q96II8 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 Z99916.3-201ENST00000623422 1080 ntBASIC18.36■□□□□ 0.53
LRCH3Q96II8 AC004840.1-201ENST00000636359 365 ntBASIC18.36■□□□□ 0.53
LRCH3Q96II8 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.36■□□□□ 0.53
LRCH3Q96II8 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LRCH3Q96II8 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRCH3Q96II8 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRCH3Q96II8 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRCH3Q96II8 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRCH3Q96II8 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRCH3Q96II8 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LRCH3Q96II8 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRCH3Q96II8 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 MIR1908-201ENST00000410394 80 ntBASIC18.35■□□□□ 0.53
LRCH3Q96II8 TMEM14DP-201ENST00000422205 345 ntBASIC18.35■□□□□ 0.53
LRCH3Q96II8 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 AC087163.2-201ENST00000457299 853 ntBASIC18.35■□□□□ 0.53
LRCH3Q96II8 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 MIR6727-201ENST00000620702 65 ntBASIC18.35■□□□□ 0.53
LRCH3Q96II8 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRCH3Q96II8 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LRCH3Q96II8 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LRCH3Q96II8 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LRCH3Q96II8 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.35■□□□□ 0.53
LRCH3Q96II8 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 AC020907.1-201ENST00000616460 1350 ntBASIC18.34■□□□□ 0.53
LRCH3Q96II8 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 DFFBP1-201ENST00000433250 979 ntBASIC18.34■□□□□ 0.53
LRCH3Q96II8 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
LRCH3Q96II8 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LRCH3Q96II8 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.53
LRCH3Q96II8 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms