Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 TECR-220ENST00000600083 1204 ntTSL 2 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.79■□□□□ 0.44
CHD9Q3L8U1 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 CETN4P-206ENST00000642099 2168 ntBASIC17.78■□□□□ 0.44
CHD9Q3L8U1 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 AL079307.3-201ENST00000556114 283 ntBASIC17.78■□□□□ 0.44
CHD9Q3L8U1 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 KRT18P55-202ENST00000578578 1546 ntBASIC17.78■□□□□ 0.44
CHD9Q3L8U1 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 AC092933.1-201ENST00000393644 945 ntBASIC17.78■□□□□ 0.44
CHD9Q3L8U1 AC007389.4-201ENST00000454674 793 ntBASIC17.78■□□□□ 0.44
CHD9Q3L8U1 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.78■□□□□ 0.44
CHD9Q3L8U1 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 NME6-203ENST00000415644 849 ntTSL 2 BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 CROCCP4-201ENST00000457096 498 ntBASIC17.77■□□□□ 0.44
CHD9Q3L8U1 PARP8-206ENST00000503665 572 ntTSL 4 BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 MTND6P24-201ENST00000440466 518 ntBASIC17.77■□□□□ 0.44
CHD9Q3L8U1 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 AL139327.4-201ENST00000612362 153 ntBASIC17.77■□□□□ 0.44
CHD9Q3L8U1 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
CHD9Q3L8U1 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHD9Q3L8U1 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CHD9Q3L8U1 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHD9Q3L8U1 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHD9Q3L8U1 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHD9Q3L8U1 HLA-H-201ENST00000383620 1096 ntBASIC17.77■□□□□ 0.43
CHD9Q3L8U1 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
CHD9Q3L8U1 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 AC020907.1-201ENST00000616460 1350 ntBASIC17.76■□□□□ 0.43
CHD9Q3L8U1 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHD9Q3L8U1 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHD9Q3L8U1 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms