Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.91■□□□□ 0.14
RFX4Q33E94 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC15.91■□□□□ 0.14
RFX4Q33E94 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.91■□□□□ 0.14
RFX4Q33E94 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.91■□□□□ 0.14
RFX4Q33E94 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC15.91■□□□□ 0.14
RFX4Q33E94 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
RFX4Q33E94 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 MTHFR-217ENST00000641820 1569 ntBASIC15.91■□□□□ 0.14
RFX4Q33E94 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
RFX4Q33E94 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
RFX4Q33E94 HLA-A-202ENST00000376806 1854 ntBASIC15.91■□□□□ 0.14
RFX4Q33E94 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.9■□□□□ 0.14
RFX4Q33E94 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.9■□□□□ 0.14
RFX4Q33E94 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
RFX4Q33E94 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC15.9■□□□□ 0.14
RFX4Q33E94 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
RFX4Q33E94 AC079328.2-201ENST00000561241 3354 ntBASIC15.9■□□□□ 0.14
RFX4Q33E94 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
RFX4Q33E94 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
RFX4Q33E94 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 YBX1P2-201ENST00000489612 999 ntBASIC15.9■□□□□ 0.14
RFX4Q33E94 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
RFX4Q33E94 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC15.9■□□□□ 0.14
RFX4Q33E94 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC15.9■□□□□ 0.14
RFX4Q33E94 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
RFX4Q33E94 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
RFX4Q33E94 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.9■□□□□ 0.14
RFX4Q33E94 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.9■□□□□ 0.14
RFX4Q33E94 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
RFX4Q33E94 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.9■□□□□ 0.14
RFX4Q33E94 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
RFX4Q33E94 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
RFX4Q33E94 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 ADM-208ENST00000534464 1640 ntTSL 2 BASIC15.9■□□□□ 0.14
RFX4Q33E94 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
RFX4Q33E94 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
RFX4Q33E94 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.89■□□□□ 0.13
RFX4Q33E94 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
RFX4Q33E94 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
RFX4Q33E94 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.89■□□□□ 0.13
RFX4Q33E94 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 COPE-203ENST00000351079 907 ntTSL 2 BASIC15.89■□□□□ 0.13
RFX4Q33E94 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
RFX4Q33E94 AL137013.1-201ENST00000432946 1228 ntBASIC15.89■□□□□ 0.13
RFX4Q33E94 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
RFX4Q33E94 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC15.89■□□□□ 0.13
RFX4Q33E94 GPR32P1-201ENST00000601788 811 ntBASIC15.89■□□□□ 0.13
RFX4Q33E94 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.89■□□□□ 0.13
RFX4Q33E94 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.89■□□□□ 0.13
RFX4Q33E94 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.89■□□□□ 0.13
RFX4Q33E94 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
RFX4Q33E94 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.89■□□□□ 0.13
RFX4Q33E94 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.89■□□□□ 0.13
RFX4Q33E94 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC15.89■□□□□ 0.13
RFX4Q33E94 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
RFX4Q33E94 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms