Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM4P67936 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM4P67936 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
TPM4P67936 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM4P67936 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM4P67936 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM4P67936 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
TPM4P67936 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TPM4P67936 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.16■□□□□ 0.66
TPM4P67936 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.16■□□□□ 0.66
TPM4P67936 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.16■□□□□ 0.66
TPM4P67936 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TPM4P67936 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.16■□□□□ 0.66
TPM4P67936 AC007967.3-201ENST00000434308 558 ntBASIC19.16■□□□□ 0.66
TPM4P67936 ATP5G1P1-201ENST00000448724 379 ntBASIC19.16■□□□□ 0.66
TPM4P67936 AL359075.1-203ENST00000462729 1002 ntBASIC19.16■□□□□ 0.66
TPM4P67936 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TPM4P67936 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
TPM4P67936 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.16■□□□□ 0.66
TPM4P67936 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.16■□□□□ 0.66
TPM4P67936 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.16■□□□□ 0.66
TPM4P67936 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.16■□□□□ 0.66
TPM4P67936 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
TPM4P67936 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.16■□□□□ 0.66
TPM4P67936 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
TPM4P67936 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TPM4P67936 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM4P67936 PCDHB17P-201ENST00000539533 2393 ntBASIC19.15■□□□□ 0.66
TPM4P67936 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.15■□□□□ 0.66
TPM4P67936 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
TPM4P67936 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
TPM4P67936 MIR662-201ENST00000384847 95 ntBASIC19.15■□□□□ 0.66
TPM4P67936 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TPM4P67936 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
TPM4P67936 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.15■□□□□ 0.66
TPM4P67936 AC103564.2-201ENST00000432853 1299 ntBASIC19.15■□□□□ 0.66
TPM4P67936 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.15■□□□□ 0.66
TPM4P67936 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.15■□□□□ 0.66
TPM4P67936 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
TPM4P67936 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TPM4P67936 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC19.15■□□□□ 0.66
TPM4P67936 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 AC103702.1-201ENST00000548801 2630 ntBASIC19.15■□□□□ 0.66
TPM4P67936 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TPM4P67936 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM4P67936 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
TPM4P67936 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
TPM4P67936 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
TPM4P67936 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.66
TPM4P67936 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.14■□□□□ 0.66
TPM4P67936 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
TPM4P67936 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.14■□□□□ 0.66
TPM4P67936 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
TPM4P67936 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM4P67936 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM4P67936 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.14■□□□□ 0.65
TPM4P67936 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.14■□□□□ 0.65
TPM4P67936 PCDHA1-201ENST00000378133 2726 ntBASIC19.14■□□□□ 0.65
TPM4P67936 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM4P67936 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM4P67936 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
TPM4P67936 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM4P67936 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM4P67936 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM4P67936 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TPM4P67936 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM4P67936 AC122714.2-201ENST00000502787 707 ntBASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms