Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.57■□□□□ 0.24
HNF4AP41235 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.57■□□□□ 0.24
HNF4AP41235 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.57■□□□□ 0.24
HNF4AP41235 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 FRMD8P1-201ENST00000440433 1524 ntBASIC16.57■□□□□ 0.24
HNF4AP41235 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.57■□□□□ 0.24
HNF4AP41235 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.57■□□□□ 0.24
HNF4AP41235 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.57■□□□□ 0.24
HNF4AP41235 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
HNF4AP41235 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
HNF4AP41235 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.57■□□□□ 0.24
HNF4AP41235 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.57■□□□□ 0.24
HNF4AP41235 FGFR3P6-201ENST00000457012 610 ntBASIC16.57■□□□□ 0.24
HNF4AP41235 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.57■□□□□ 0.24
HNF4AP41235 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
HNF4AP41235 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.57■□□□□ 0.24
HNF4AP41235 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 SART3-203ENST00000546611 1184 ntBASIC16.57■□□□□ 0.24
HNF4AP41235 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.57■□□□□ 0.24
HNF4AP41235 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.57■□□□□ 0.24
HNF4AP41235 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.57■□□□□ 0.24
HNF4AP41235 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.57■□□□□ 0.24
HNF4AP41235 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
HNF4AP41235 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.57■□□□□ 0.24
HNF4AP41235 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 NKILA-202ENST00000614771 2598 ntBASIC16.57■□□□□ 0.24
HNF4AP41235 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.57■□□□□ 0.24
HNF4AP41235 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
HNF4AP41235 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HNF4AP41235 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.57■□□□□ 0.24
HNF4AP41235 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.56■□□□□ 0.24
HNF4AP41235 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.56■□□□□ 0.24
HNF4AP41235 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
HNF4AP41235 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.56■□□□□ 0.24
HNF4AP41235 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 AC105020.1-201ENST00000435356 2205 ntBASIC16.56■□□□□ 0.24
HNF4AP41235 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HNF4AP41235 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HNF4AP41235 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HNF4AP41235 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.56■□□□□ 0.24
HNF4AP41235 LINC00982-205ENST00000420957 435 ntBASIC16.56■□□□□ 0.24
HNF4AP41235 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.56■□□□□ 0.24
HNF4AP41235 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.56■□□□□ 0.24
HNF4AP41235 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.56■□□□□ 0.24
HNF4AP41235 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
HNF4AP41235 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.56■□□□□ 0.24
HNF4AP41235 AL691432.3-201ENST00000621860 400 ntBASIC16.56■□□□□ 0.24
HNF4AP41235 AL139288.1-201ENST00000623748 933 ntBASIC16.56■□□□□ 0.24
HNF4AP41235 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
HNF4AP41235 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HNF4AP41235 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.56■□□□□ 0.24
HNF4AP41235 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.56■□□□□ 0.24
HNF4AP41235 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.56■□□□□ 0.24
HNF4AP41235 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.56■□□□□ 0.24
HNF4AP41235 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HNF4AP41235 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
HNF4AP41235 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HNF4AP41235 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
HNF4AP41235 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HNF4AP41235 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.55■□□□□ 0.24
HNF4AP41235 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HNF4AP41235 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.55■□□□□ 0.24
HNF4AP41235 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
HNF4AP41235 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms