Protein–RNA interactions for Protein: P31273

HOXC8, Homeobox protein Hox-C8, humanhuman

Predictions only

Length 242 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC8P31273 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HOXC8P31273 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HOXC8P31273 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.42■□□□□ 0.54
HOXC8P31273 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HOXC8P31273 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HOXC8P31273 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HOXC8P31273 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC8P31273 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
HOXC8P31273 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC8P31273 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC8P31273 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
HOXC8P31273 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
HOXC8P31273 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC8P31273 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC8P31273 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC8P31273 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC18.41■□□□□ 0.54
HOXC8P31273 MRPS18AP1-201ENST00000414458 589 ntBASIC18.41■□□□□ 0.54
HOXC8P31273 TERF1P3-201ENST00000505638 1227 ntBASIC18.41■□□□□ 0.54
HOXC8P31273 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC8P31273 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.41■□□□□ 0.54
HOXC8P31273 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.41■□□□□ 0.54
HOXC8P31273 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
HOXC8P31273 AC008761.3-201ENST00000624803 892 ntBASIC18.41■□□□□ 0.54
HOXC8P31273 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.41■□□□□ 0.54
HOXC8P31273 AF228730.6-201ENST00000641497 218 ntBASIC18.41■□□□□ 0.54
HOXC8P31273 AC084121.3-201ENST00000641716 218 ntBASIC18.41■□□□□ 0.54
HOXC8P31273 AC105233.6-201ENST00000642093 218 ntBASIC18.41■□□□□ 0.54
HOXC8P31273 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC8P31273 TUBB8P12-201ENST00000308911 1335 ntBASIC18.41■□□□□ 0.54
HOXC8P31273 TUBB7P-202ENST00000428444 1305 ntBASIC18.41■□□□□ 0.54
HOXC8P31273 TUBB8P7-204ENST00000567960 1332 ntBASIC18.41■□□□□ 0.54
HOXC8P31273 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC8P31273 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
HOXC8P31273 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.41■□□□□ 0.54
HOXC8P31273 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.4■□□□□ 0.54
HOXC8P31273 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HOXC8P31273 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
HOXC8P31273 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.4■□□□□ 0.54
HOXC8P31273 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.4■□□□□ 0.54
HOXC8P31273 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 AC015922.1-201ENST00000421102 1152 ntBASIC18.4■□□□□ 0.54
HOXC8P31273 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
HOXC8P31273 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.4■□□□□ 0.54
HOXC8P31273 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.4■□□□□ 0.54
HOXC8P31273 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.4■□□□□ 0.54
HOXC8P31273 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.4■□□□□ 0.54
HOXC8P31273 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.4■□□□□ 0.54
HOXC8P31273 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.4■□□□□ 0.54
HOXC8P31273 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.4■□□□□ 0.54
HOXC8P31273 AC239800.4-201ENST00000603712 296 ntBASIC18.4■□□□□ 0.54
HOXC8P31273 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.4■□□□□ 0.54
HOXC8P31273 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.4■□□□□ 0.54
HOXC8P31273 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
HOXC8P31273 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 CROCCP2-202ENST00000412962 2773 ntBASIC18.4■□□□□ 0.54
HOXC8P31273 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.4■□□□□ 0.54
HOXC8P31273 SNX33P1-201ENST00000592116 1762 ntBASIC18.4■□□□□ 0.54
HOXC8P31273 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HOXC8P31273 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HOXC8P31273 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
HOXC8P31273 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
HOXC8P31273 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
HOXC8P31273 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC8P31273 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
HOXC8P31273 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC8P31273 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC8P31273 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
HOXC8P31273 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
HOXC8P31273 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC8P31273 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC8P31273 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC8P31273 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC8P31273 IGHV3-42-201ENST00000520410 361 ntBASIC18.39■□□□□ 0.53
HOXC8P31273 LINC02560-201ENST00000596379 459 ntBASIC18.39■□□□□ 0.53
HOXC8P31273 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
HOXC8P31273 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC8P31273 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC8P31273 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
HOXC8P31273 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC8P31273 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXC8P31273 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXC8P31273 AC006277.1-201ENST00000624348 1610 ntBASIC18.38■□□□□ 0.53
HOXC8P31273 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HOXC8P31273 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms