Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LDB3O75112 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.05■□□□□ 0.16
LDB3O75112 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LDB3O75112 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
LDB3O75112 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.05■□□□□ 0.16
LDB3O75112 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 IL9RP2-201ENST00000423948 1312 ntBASIC16.05■□□□□ 0.16
LDB3O75112 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.05■□□□□ 0.16
LDB3O75112 AL590627.1-203ENST00000421194 1026 ntBASIC16.05■□□□□ 0.16
LDB3O75112 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LDB3O75112 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
LDB3O75112 IGHV3-22-201ENST00000520721 359 ntBASIC16.05■□□□□ 0.16
LDB3O75112 AC124947.2-201ENST00000547118 1133 ntBASIC16.05■□□□□ 0.16
LDB3O75112 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.05■□□□□ 0.16
LDB3O75112 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 TERC-201ENST00000602385 541 ntBASIC16.05■□□□□ 0.16
LDB3O75112 AC008667.4-201ENST00000607370 168 ntBASIC16.05■□□□□ 0.16
LDB3O75112 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
LDB3O75112 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LDB3O75112 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.04■□□□□ 0.16
LDB3O75112 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
LDB3O75112 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
LDB3O75112 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.04■□□□□ 0.16
LDB3O75112 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.04■□□□□ 0.16
LDB3O75112 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.04■□□□□ 0.16
LDB3O75112 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
LDB3O75112 PAWRP1-201ENST00000451083 565 ntBASIC16.04■□□□□ 0.16
LDB3O75112 RNA5SP415-201ENST00000517246 115 ntBASIC16.04■□□□□ 0.16
LDB3O75112 IGHV3-65-201ENST00000523210 341 ntBASIC16.04■□□□□ 0.16
LDB3O75112 UNC93B6-202ENST00000528242 690 ntBASIC16.04■□□□□ 0.16
LDB3O75112 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.04■□□□□ 0.16
LDB3O75112 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.04■□□□□ 0.16
LDB3O75112 AC120114.3-201ENST00000611923 658 ntBASIC16.04■□□□□ 0.16
LDB3O75112 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.04■□□□□ 0.16
LDB3O75112 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
LDB3O75112 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.04■□□□□ 0.16
LDB3O75112 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.04■□□□□ 0.16
LDB3O75112 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
LDB3O75112 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.04■□□□□ 0.16
LDB3O75112 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LDB3O75112 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.03■□□□□ 0.16
LDB3O75112 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.03■□□□□ 0.16
LDB3O75112 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.03■□□□□ 0.16
LDB3O75112 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.03■□□□□ 0.16
LDB3O75112 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
LDB3O75112 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.03■□□□□ 0.16
LDB3O75112 AC087163.2-201ENST00000457299 853 ntBASIC16.03■□□□□ 0.16
LDB3O75112 AC108073.2-201ENST00000464002 357 ntBASIC16.03■□□□□ 0.16
LDB3O75112 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.03■□□□□ 0.16
LDB3O75112 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.03■□□□□ 0.16
LDB3O75112 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.03■□□□□ 0.16
LDB3O75112 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 AF228730.7-201ENST00000641842 219 ntBASIC16.03■□□□□ 0.16
LDB3O75112 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LDB3O75112 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms