Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 KLF4P1-201ENST00000412782 1185 ntBASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 AL671277.2-201ENST00000458060 996 ntBASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 AC090616.6-201ENST00000582640 721 ntBASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 AC066615.1-201ENST00000640911 628 ntBASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 AL513523.2-202ENST00000427283 2040 ntBASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 AP002490.2-201ENST00000524791 560 ntBASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TRIM49D1C9J1S8 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 AC104076.2-201ENST00000448912 469 ntBASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 AC063952.2-201ENST00000498792 1227 ntBASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 TUBB8P12-201ENST00000308911 1335 ntBASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 TUBB7P-202ENST00000428444 1305 ntBASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 TUBB8P7-204ENST00000567960 1332 ntBASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
TRIM49D1C9J1S8 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms