Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 AP000550.4-202ENST00000639755 178 ntBASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 AL513523.2-202ENST00000427283 2040 ntBASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 KRT18P35-201ENST00000510488 1269 ntBASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 AC009533.2-201ENST00000543664 586 ntBASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC39Q9UFE4 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 LYSMD4-203ENST00000378904 2122 ntBASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 AC122714.2-201ENST00000502787 707 ntBASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 IGHV3-52-201ENST00000519770 353 ntBASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 AC132872.4-202ENST00000622924 2756 ntBASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 AC092068.3-201ENST00000587894 2016 ntBASIC19.8■□□□□ 0.76
CCDC39Q9UFE4 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC39Q9UFE4 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms