Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NKX3-1Q99801 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NKX3-1Q99801 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
NKX3-1Q99801 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NKX3-1Q99801 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
NKX3-1Q99801 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NKX3-1Q99801 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NKX3-1Q99801 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
NKX3-1Q99801 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NKX3-1Q99801 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NKX3-1Q99801 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NKX3-1Q99801 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
NKX3-1Q99801 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NKX3-1Q99801 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
NKX3-1Q99801 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NKX3-1Q99801 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NKX3-1Q99801 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
NKX3-1Q99801 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
NKX3-1Q99801 SAPCD2P2-201ENST00000431719 1174 ntBASIC14.96□□□□□ -0.01
NKX3-1Q99801 AC002558.1-201ENST00000488906 803 ntBASIC14.96□□□□□ -0.01
NKX3-1Q99801 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 CD320-202ENST00000537716 1119 ntTSL 2 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 LTBR-211ENST00000543190 785 ntTSL 3 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 WDR6-223ENST00000627177 207 ntTSL 2 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
NKX3-1Q99801 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.96□□□□□ -0.01
NKX3-1Q99801 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
NKX3-1Q99801 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
NKX3-1Q99801 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.96□□□□□ -0.02
NKX3-1Q99801 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
NKX3-1Q99801 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.96□□□□□ -0.02
NKX3-1Q99801 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.96□□□□□ -0.02
NKX3-1Q99801 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.02
NKX3-1Q99801 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.02
NKX3-1Q99801 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 COX5BP2-201ENST00000392354 334 ntBASIC14.95□□□□□ -0.02
NKX3-1Q99801 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 PON3-205ENST00000451904 1053 ntTSL 3 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
NKX3-1Q99801 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
NKX3-1Q99801 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC14.94□□□□□ -0.02
NKX3-1Q99801 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
NKX3-1Q99801 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms