Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.96■□□□□ 0.31
VPS35Q96QK1 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
VPS35Q96QK1 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
VPS35Q96QK1 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS35Q96QK1 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VPS35Q96QK1 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
VPS35Q96QK1 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VPS35Q96QK1 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
VPS35Q96QK1 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.96■□□□□ 0.3
VPS35Q96QK1 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
VPS35Q96QK1 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VPS35Q96QK1 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
VPS35Q96QK1 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.95■□□□□ 0.3
VPS35Q96QK1 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 RPL13AP23-201ENST00000480739 586 ntBASIC16.95■□□□□ 0.3
VPS35Q96QK1 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.95■□□□□ 0.3
VPS35Q96QK1 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
VPS35Q96QK1 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS35Q96QK1 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS35Q96QK1 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS35Q96QK1 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS35Q96QK1 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS35Q96QK1 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS35Q96QK1 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS35Q96QK1 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS35Q96QK1 MRPL20P1-201ENST00000400819 433 ntBASIC16.94■□□□□ 0.3
VPS35Q96QK1 PRSS29P-201ENST00000440800 595 ntBASIC16.94■□□□□ 0.3
VPS35Q96QK1 AC034105.1-201ENST00000563488 319 ntBASIC16.94■□□□□ 0.3
VPS35Q96QK1 AC106730.1-201ENST00000566722 1090 ntBASIC16.94■□□□□ 0.3
VPS35Q96QK1 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS35Q96QK1 FRMD8P1-201ENST00000440433 1524 ntBASIC16.94■□□□□ 0.3
VPS35Q96QK1 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 AC104109.2-201ENST00000602919 1418 ntBASIC16.94■□□□□ 0.3
VPS35Q96QK1 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS35Q96QK1 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS35Q96QK1 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
VPS35Q96QK1 AC108860.2-201ENST00000562760 2183 ntBASIC16.94■□□□□ 0.3
VPS35Q96QK1 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS35Q96QK1 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS35Q96QK1 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS35Q96QK1 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS35Q96QK1 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS35Q96QK1 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 ZNF259P1-201ENST00000407656 1365 ntBASIC16.93■□□□□ 0.3
VPS35Q96QK1 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS35Q96QK1 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS35Q96QK1 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS35Q96QK1 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS35Q96QK1 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms