Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AC109635.5-201ENST00000533593 962 ntBASIC17.3■□□□□ 0.36
CHFRQ96EP1 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 AC138649.4-201ENST00000612222 287 ntBASIC17.3■□□□□ 0.36
CHFRQ96EP1 AJ011932.1-201ENST00000621707 465 ntBASIC17.3■□□□□ 0.36
CHFRQ96EP1 AL161645.1-201ENST00000622716 1255 ntBASIC17.3■□□□□ 0.36
CHFRQ96EP1 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
CHFRQ96EP1 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHFRQ96EP1 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 RBPMS2P1-201ENST00000437762 623 ntBASIC17.29■□□□□ 0.36
CHFRQ96EP1 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 CNN2P2-201ENST00000443536 909 ntBASIC17.29■□□□□ 0.36
CHFRQ96EP1 CNN2P3-201ENST00000450201 906 ntBASIC17.29■□□□□ 0.36
CHFRQ96EP1 UGT1A2P-201ENST00000454886 866 ntBASIC17.29■□□□□ 0.36
CHFRQ96EP1 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 AL136317.3-201ENST00000618497 906 ntBASIC17.29■□□□□ 0.36
CHFRQ96EP1 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.29■□□□□ 0.36
CHFRQ96EP1 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHFRQ96EP1 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CHFRQ96EP1 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 AC008677.1-201ENST00000519230 1561 ntBASIC17.28■□□□□ 0.36
CHFRQ96EP1 TUBB3P1-201ENST00000405796 1332 ntBASIC17.28■□□□□ 0.36
CHFRQ96EP1 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.28■□□□□ 0.36
CHFRQ96EP1 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC17.28■□□□□ 0.36
CHFRQ96EP1 AC026150.2-201ENST00000564693 1156 ntBASIC17.28■□□□□ 0.36
CHFRQ96EP1 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.28■□□□□ 0.36
CHFRQ96EP1 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.28■□□□□ 0.36
CHFRQ96EP1 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CHFRQ96EP1 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.28■□□□□ 0.36
CHFRQ96EP1 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.28■□□□□ 0.36
CHFRQ96EP1 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.28■□□□□ 0.36
CHFRQ96EP1 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CHFRQ96EP1 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.28■□□□□ 0.36
CHFRQ96EP1 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CHFRQ96EP1 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHFRQ96EP1 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHFRQ96EP1 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHFRQ96EP1 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHFRQ96EP1 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHFRQ96EP1 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHFRQ96EP1 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHFRQ96EP1 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHFRQ96EP1 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHFRQ96EP1 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHFRQ96EP1 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.27■□□□□ 0.36
CHFRQ96EP1 AL353732.1-201ENST00000569618 1459 ntBASIC17.27■□□□□ 0.36
CHFRQ96EP1 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms