Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 HLA-F-220ENST00000434407 884 ntBASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 PVRIG2P-201ENST00000435460 978 ntBASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 KRT18P56-201ENST00000507275 550 ntBASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
DEPDC4Q8N2C3 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
DEPDC4Q8N2C3 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
DEPDC4Q8N2C3 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
DEPDC4Q8N2C3 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
DEPDC4Q8N2C3 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.96■□□□□ 0.14
DEPDC4Q8N2C3 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 SSR1P1-201ENST00000407630 814 ntBASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 HCG4P8-203ENST00000443049 980 ntBASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.95■□□□□ 0.14
DEPDC4Q8N2C3 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 AC093525.9-201ENST00000624961 1746 ntBASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 CYP2T1P-202ENST00000641596 2535 ntBASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.94■□□□□ 0.14
DEPDC4Q8N2C3 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms